RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ANKRD61A6NGH8 418 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 H0YL77 283 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 TNFRSF13BO14836 293 aaPredicted RBP9.24□□□□□ -0.93
VPS53-207ENST00000570510 CHP2O43745 196 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 ENSAO43768 121 aaKnown RBP9.24□□□□□ -0.93
VPS53-207ENST00000570510 TOX4O94842 621 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 QDPRP09417 244 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 KDELR2P33947 212 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 RBM34P42696 430 aaKnown RBP9.24□□□□□ -0.93
VPS53-207ENST00000570510 PITPNBP48739 271 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 PPP1CBP62140 327 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 HERPUD1Q15011 391 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 TAF11Q15544 211 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 DUSP7Q16829 419 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 SPRNQ5BIV9 151 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 PABPC1L2AQ5JQF8 200 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 ARL9Q6T311 187 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 LINC00114Q6XXX2 140 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 ZNF101Q8IZC7 436 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 ARHGAP24Q8N264 748 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 C10orf111Q8N326 155 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 OR4S1Q8NGB4 309 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 ZNF426Q9BUY5 554 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 C16orf95Q9H693 158 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 ELOVL3Q9HB03 270 aa9.24□□□□□ -0.93
VPS53-207ENST00000570510 TET2Q6N021 2002 aaPredicted RBP9.24□□□□□ -0.93
VPS53-207ENST00000570510 TRAPPC13A5PLN9 417 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 TMEM178BH3BS89 294 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 IFNL4K9M1U5 179 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 P2RY10O00398 339 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 GPR37O15354 613 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 ZNF205O95201 554 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 FAM107AO95990 144 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 CD247P20963 164 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 GSTM3P21266 225 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 IER3P46695 156 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 CLRN1P58418 232 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 GNGT1P63211 74 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SELENOWP63302 87 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 PAX2Q02962 417 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SELPLGQ14242 412 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 OR1Q1Q15612 314 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 NPTX1Q15818 432 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 RABL3Q5HYI8 236 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SLC35D2Q76EJ3 337 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SLC15A3Q8IY34 581 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 MICU2Q8IYU8 434 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 ALDH16A1Q8IZ83 802 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 GALNT4Q8N4A0 578 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 C11orf44Q8N8P7 122 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 OR6X1Q8NH79 312 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 VANGL1Q8TAA9 524 aaPredicted RBP9.23□□□□□ -0.93
VPS53-207ENST00000570510 ITLN1Q8WWA0 313 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 TMEM54Q969K7 222 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SLC41A3Q96GZ6 507 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SLC25A44Q96H78 314 aaPredicted RBP9.23□□□□□ -0.93
VPS53-207ENST00000570510 MCHR1Q99705 422 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 TMEM165Q9HC07 324 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 SPAG4Q9NPE6 437 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 MAN2C1Q9NTJ4 1040 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 MRPL39Q9NYK5 338 aaKnown RBP9.23□□□□□ -0.93
VPS53-207ENST00000570510 IL19Q9UHD0 177 aa9.23□□□□□ -0.93
VPS53-207ENST00000570510 TENM3Q9P273 2699 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 LRRC30A6NM36 301 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 H3BSA7 217 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 PLPP3O14495 311 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 RNF13O43567 381 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 MGRN1O60291 552 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 TPST1O60507 370 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 OR5F1O95221 314 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 HTR2AP28223 471 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 GABRA5P31644 462 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 TGFBR2P37173 567 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 CD69Q07108 199 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 DBPQ10586 325 aaPredicted RBP9.22□□□□□ -0.93
VPS53-207ENST00000570510 CDK5R2Q13319 367 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 KRT72Q14CN4 511 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 ANKDD1AQ495B1 522 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 METTL11BQ5VVY1 283 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 ZNF774Q6NX45 483 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 LRFN4Q6PJG9 635 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 WDR88Q6ZMY6 472 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 FITM2Q8N6M3 262 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 ATG16L2Q8NAA4 619 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 GPR32P1Q8NGA4 272 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 OR5J2Q8NH18 312 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 LIPHQ8WWY8 451 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 TAMM41Q96BW9 452 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 RCN3Q96D15 328 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 OR2V2Q96R30 315 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 ANKRD19PQ9H560 264 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 FAM53CQ9NYF3 392 aa9.22□□□□□ -0.93
VPS53-207ENST00000570510 CAB39Q9Y376 341 aaPredicted RBP9.22□□□□□ -0.93
VPS53-207ENST00000570510 CENPVL3A0A0U1RRI6 287 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 NPIPB13A6NJU9 1138 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 CENPBD1B2RD01 187 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 NPIPB4C9JG80 1138 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 SHOX2O60902 331 aaPredicted RBP9.21□□□□□ -0.94
VPS53-207ENST00000570510 GMNNO75496 209 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 IGHG1P01857 330 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms