RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 GPR6P46095 362 aaPredicted RBP15.65■□□□□ 0.1
CLN3-237ENST00000569030 ZNF81P51508 661 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 TMEM33P57088 247 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 CCNIQ14094 377 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 SLC35F1Q5T1Q4 408 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 JAZF1Q86VZ6 243 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 C1orf174Q8IYL3 243 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 HPS1Q92902 700 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 BEX2Q9BXY8 128 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 RACGAP1Q9H0H5 632 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 C1orf21Q9H246 121 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 FN3KQ9H479 309 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 NARFLQ9H6Q4 476 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 RPRD1BQ9NQG5 326 aaKnown RBP15.65■□□□□ 0.1
CLN3-237ENST00000569030 TBCCD1Q9NVR7 557 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 PRPF19Q9UMS4 504 aaKnown RBP15.65■□□□□ 0.1
CLN3-237ENST00000569030 STARD10Q9Y365 291 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 GRIP1Q9Y3R0 1128 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 LHFPL6Q9Y693 200 aa15.65■□□□□ 0.1
CLN3-237ENST00000569030 ZSCAN5BA6NJL1 495 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 PPIHO43447 177 aaKnown RBP15.64■□□□□ 0.09
CLN3-237ENST00000569030 SPRY3O43610 288 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 IDH3BO43837 385 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 RENP00797 406 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 IGHV1-46P01743 117 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 DBHP09172 617 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 NOS3P29474 1203 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 CRYBB2P43320 205 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 ARHGDIAP52565 204 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 HIST1H3AP68431 136 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 PSG7Q13046 419 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 SPRNQ5BIV9 151 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 CLEC12AQ5QGZ9 265 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 HIST2H3PS2Q5TEC6 136 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 CORO6Q6QEF8 472 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 ARL9Q6T311 187 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 IL17RELQ6ZVW7 336 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 HIST2H3AQ71DI3 136 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 ZBTB46Q86UZ6 589 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 NPEPL1Q8NDH3 523 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 SDR9C7Q8NEX9 313 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 SLC26A10Q8NG04 563 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 OR52E2Q8NGJ4 325 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 OR1F12Q8NHA8 337 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 C1orf159Q96HA4 380 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 PLA2G12AQ9BZM1 189 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 DECR2Q9NUI1 292 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 KCNS2Q9ULS6 477 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 CACNG2Q9Y698 323 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 WNK2Q9Y3S1 2297 aa15.64■□□□□ 0.09
CLN3-237ENST00000569030 IGHV1-69-2A0A0G2JMI3 117 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 H3BSA7 217 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 BHLHE40O14503 412 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 ACOT8O14734 319 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 TPD52L2O43399 206 aaKnown RBP15.63■□□□□ 0.09
CLN3-237ENST00000569030 CCNB2O95067 398 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 TFP02787 698 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 MT-ND5P03915 603 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 FAM120AOSQ5T036 256 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 OR2T5Q6IEZ7 315 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 DNM1P34Q6PK57 102 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 USP51Q70EK9 711 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 LINC00471Q8N535 108 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 OR8D4Q8NGM9 314 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 OR2T29Q8NH02 315 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 CLDND2Q8NHS1 167 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 CCDC124Q96CT7 223 aaKnown RBP15.63■□□□□ 0.09
CLN3-237ENST00000569030 ASB9Q96DX5 294 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 DDOQ99489 341 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 THTPAQ9BU02 230 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 SHARPINQ9H0F6 387 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 MSL2Q9HCI7 577 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 IL20Q9NYY1 176 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 CDH10Q9Y6N8 788 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 U3KQV3 271 aa15.63■□□□□ 0.09
CLN3-237ENST00000569030 PLSCR5A0PG75 271 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 FAM157CP0CG43 387 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 CDH15P55291 814 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 TEKQ02763 1124 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.62■□□□□ 0.09
CLN3-237ENST00000569030 RSPO1Q2MKA7 263 aaPredicted RBP15.62■□□□□ 0.09
CLN3-237ENST00000569030 FAM98BQ52LJ0 330 aaKnown RBP15.62■□□□□ 0.09
CLN3-237ENST00000569030 ZNF362Q5T0B9 420 aaPredicted RBP15.62■□□□□ 0.09
CLN3-237ENST00000569030 TRPM8Q7Z2W7 1104 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 LINC01356Q8N9X3 169 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 AQP11Q8NBQ7 271 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 CMBLQ96DG6 245 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 SAP30LQ9HAJ7 183 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 TREM2Q9NZC2 230 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 POLR1DQ9Y2S0 133 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 ARHGAP32A7KAX9 2087 aa15.62■□□□□ 0.09
CLN3-237ENST00000569030 FAM157AC9JC47 383 aa15.61■□□□□ 0.09
CLN3-237ENST00000569030 TIMM8AO60220 97 aaPredicted RBP15.61■□□□□ 0.09
CLN3-237ENST00000569030 COX10Q12887 443 aa15.61■□□□□ 0.09
CLN3-237ENST00000569030 HNRNPA0Q13151 305 aaKnown RBP15.61■□□□□ 0.09
CLN3-237ENST00000569030 MICAQ29983 383 aa15.61■□□□□ 0.09
CLN3-237ENST00000569030 FAM209AQ5JX71 171 aa15.61■□□□□ 0.09
CLN3-237ENST00000569030 RASSF6Q6ZTQ3 369 aa15.61■□□□□ 0.09
CLN3-237ENST00000569030 LINC00346Q8IVM7 164 aa15.61■□□□□ 0.09
CLN3-237ENST00000569030 CYB561A3Q8NBI2 242 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms