RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 EMC6Q9BV81 110 aa7.54□□□□□ -1.2
USP28-205ENST00000537706 SIRPDQ9H106 197 aa7.54□□□□□ -1.2
USP28-205ENST00000537706 CCNB1IP1Q9NPC3 277 aa7.54□□□□□ -1.2
USP28-205ENST00000537706 TBCCD1Q9NVR7 557 aa7.54□□□□□ -1.2
USP28-205ENST00000537706 CCDC167Q9P0B6 97 aa7.54□□□□□ -1.2
USP28-205ENST00000537706 NDRG4Q9ULP0 352 aaKnown RBP7.54□□□□□ -1.2
USP28-205ENST00000537706 MAB21L2Q9Y586 359 aa7.54□□□□□ -1.2
USP28-205ENST00000537706 A0A1B0GVI7 797 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 CLDN24A6NM45 220 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 FTCDNL1E5RQL4 147 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 M0R082 166 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 RAMP3O60896 148 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 FZD7O75084 574 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 ZNF205O95201 554 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 IL7RP16871 459 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 PAICSP22234 425 aaKnown RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 SRP9P49458 86 aaKnown RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 PSME3P61289 254 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 RPL38P63173 70 aaKnown RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 FLOT2Q14254 428 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 KIAA0040Q15053 153 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 C8orf82Q6P1X6 216 aaPredicted RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 LIAT1Q6ZQX7 453 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 CMTM4Q8IZR5 234 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 OR9I1Q8NGQ6 314 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 FGFBP3Q8TAT2 258 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 ZNF417Q8TAU3 575 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 SLC7A13Q8TCU3 470 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 SLC26A7Q8TE54 656 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 TSPEARQ8WU66 669 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 ZNF587Q96SQ5 575 aaPredicted RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 CDRT15Q96T59 188 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 ZNF184Q99676 751 aaPredicted RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 VCX3BQ9H321 246 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 CACYBPQ9HB71 228 aaKnown RBP7.53□□□□□ -1.2
USP28-205ENST00000537706 SPAG4Q9NPE6 437 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 TMEM38BQ9NVV0 291 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 AIG1Q9NVV5 245 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 HYDINQ4G0P3 5121 aa7.53□□□□□ -1.2
USP28-205ENST00000537706 RNF103-CHMP3A0A140T963 221 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 ADARB2-AS1A8MUL3 147 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 NPIPB7O75200 414 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 CYB5R3P00387 301 aaPredicted RBP7.52□□□□□ -1.2
USP28-205ENST00000537706 ALDOBP05062 364 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 LINC00032P0C843 101 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 STOMP27105 288 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 ARF6P62330 175 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 SMU1Q2TAY7 513 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 PDCD4Q53EL6 469 aaKnown RBP7.52□□□□□ -1.2
USP28-205ENST00000537706 NKAPLQ5M9Q1 402 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 FAM69AQ5T7M9 428 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 ZFP1Q6P2D0 407 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 KCTD18Q6PI47 426 aaPredicted RBP7.52□□□□□ -1.2
USP28-205ENST00000537706 HMGN2P46Q86SG4 172 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 FUNDC1Q8IVP5 155 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 ATG16L2Q8NAA4 619 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 PCYOX1LQ8NBM8 494 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 OR7A2PQ8NGA2 310 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 MIPOL1Q8TD10 442 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 PYDC1Q8WXC3 89 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 ASB9Q96DX5 294 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 SPATA9Q9BWV2 254 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 ASPNQ9BXN1 380 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 NDUFAF1Q9Y375 327 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 KPTNQ9Y664 436 aa7.52□□□□□ -1.2
USP28-205ENST00000537706 SACSQ9NZJ4 4579 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 TANC2Q9HCD6 1990 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 C5orf49A4QMS7 147 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 H3BNX3 289 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 H3BUX3 64 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 CASQ2O14958 399 aaPredicted RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 ANGPT2O15123 496 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 NPFFO15130 113 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 ECDO95905 644 aaPredicted RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 DBIP07108 87 aaKnown RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 RPSAP08865 295 aaKnown RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 LAMP1P11279 417 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 ZNF26P17031 533 aaPredicted RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 TUBG1P23258 451 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 GRPRP30550 384 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 ZNF84P51523 738 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 ZNF181Q2M3W8 571 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 C11orf91Q3C1V1 193 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 SPATS1Q496A3 300 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 SAMD4BQ5PRF9 694 aaKnown RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 MRPL2Q5T653 305 aaKnown RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 VMO1Q7Z5L0 202 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 IGFN1Q86VF2 1251 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 NPEPL1Q8NDH3 523 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 OR4K5Q8NGD3 323 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 PPP1R35Q8TAP8 253 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 FCRL1Q96LA6 429 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 NKX3-1Q99801 234 aaPredicted RBP7.52□□□□□ -1.21
USP28-205ENST00000537706 ARMC7Q9H6L4 198 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 GCM1Q9NP62 436 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 TUBG2Q9NRH3 451 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 GLTPQ9NZD2 209 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 RPS6KB2Q9UBS0 482 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 GIMAP2Q9UG22 337 aa7.52□□□□□ -1.21
USP28-205ENST00000537706 F2RL2O00254 374 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms