RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PCBP3	P57721	371 aa	Known RBP	10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	BTG1	P62324	171 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	CDK6	Q00534	326 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	WDR88	Q6ZMY6	472 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	ZER1	Q7Z7L7	766 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	AMIGO2	Q86SJ2	522 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	PATL1	Q86TB9	770 aa	Known RBP	10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	MUC20	Q8N307	709 aa	Predicted RBP	10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	KIR3DL3	Q8N743	410 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	ZNF283	Q8N7M2	679 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	OR4K5	Q8NGD3	323 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	OR5J2	Q8NH18	312 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	MARS2	Q96GW9	593 aa	Known RBP	10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	MOGAT1	Q96PD6	335 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	SEPHS2	Q99611	448 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	EVA1A	Q9H8M9	152 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	NOX4	Q9NPH5	578 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	TMEM106B	Q9NUM4	274 aa		10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	EIF3K	Q9UBQ5	218 aa	Known RBP	10.46	□□□□□ -0.73
CAPN1-223	ENST00000533079	TRAV40	A0A0B4J280	105 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079		A0A0B4J2E0	115 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079		A0A1B0GX12	115 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SLC22A31	A6NKX4	558 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SERPINI2	O75830	405 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	OR6A2	O95222	327 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	GPANK1	O95872	356 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SBK2	P0C263	348 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	PGA4	P0DJD7	388 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	PGA3	P0DJD8	388 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	ADORA3	P0DMS8	318 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	TNFRSF1A	P19438	455 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	MDH2	P40926	338 aa	Known RBP	10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	ZNF84	P51523	738 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	AQP4	P55087	323 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SEC61A1	P61619	476 aa	Known RBP	10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SELENOW	P63302	87 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	HSF2	Q03933	536 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SRSF4	Q08170	494 aa	Known RBP	10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SCARB2	Q14108	478 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	GK3P	Q14409	553 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	TAF9	Q16594	264 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	LRRC36	Q1X8D7	754 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	REEP3	Q6NUK4	255 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	DHRS4L2	Q6PKH6	230 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SLC35D2	Q76EJ3	337 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	LRRC28	Q86X40	367 aa	Predicted RBP	10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	KLF14	Q8TD94	323 aa	Predicted RBP	10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	TAF15	Q92804	592 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	NRBF2	Q96F24	287 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SLC30A2	Q9BRI3	323 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SPATA5L1	Q9BVQ7	753 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	SEMA6A	Q9H2E6	1030 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	KCNN2	Q9H2S1	579 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	C1RL	Q9NZP8	487 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	POMT1	Q9Y6A1	747 aa		10.45	□□□□□ -0.74
CAPN1-223	ENST00000533079	CENPBD1	B2RD01	187 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	IGHG1	P01857	330 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	MMP7	P09237	267 aa	Predicted RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	NUDT7	P0C024	238 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	TNFSF4	P23510	183 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	STOM	P27105	288 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	TNFAIP6	P98066	277 aa	Predicted RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	MED21	Q13503	144 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	HLX	Q14774	488 aa	Predicted RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	CYBRD1	Q53TN4	286 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	ASPHD2	Q6ICH7	369 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	LRFN4	Q6PJG9	635 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	FIP1L1	Q6UN15	594 aa	Known RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	HDDC2	Q7Z4H3	204 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	KRT73	Q86Y46	540 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	ZNF101	Q8IZC7	436 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	C10orf53	Q8N6V4	93 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	VANGL1	Q8TAA9	524 aa	Predicted RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	RASSF5	Q8WWW0	418 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	GEMIN6	Q8WXD5	167 aa	Known RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	LZIC	Q8WZA0	190 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	ZDHHC16	Q969W1	377 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	SAMD8	Q96LT4	415 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	RDH12	Q96NR8	316 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	SLC29A1	Q99808	456 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	SSBP3	Q9BWW4	388 aa	Predicted RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	TMEM27	Q9HBJ8	222 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	USE1	Q9NZ43	259 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	KLHL21	Q9UJP4	597 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	ANGPT4	Q9Y264	503 aa		10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	KMT2C	Q8NEZ4	4911 aa	Known RBP	10.44	□□□□□ -0.74
CAPN1-223	ENST00000533079	IGHV2-70D	A0A0C4DH43	119 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	C5orf58	C9J3I9	102 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	C11orf98	E9PRG8	122 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	IFNL4	K9M1U5	179 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079		M0QX08	132 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	CLPX	O76031	633 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	QDPR	P09417	244 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	SELE	P16581	610 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	CCNO	P22674	350 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	CD80	P33681	288 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	MPV17	P39210	176 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	WNT5A	P41221	380 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	CRYBA2	P53672	197 aa		10.43	□□□□□ -0.74
CAPN1-223	ENST00000533079	RELB	Q01201	579 aa		10.43	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms