RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ATPIF1Q9UII2 106 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 KCNG2Q9UJ96 466 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 LHFPL6Q9Y693 200 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 OR6C6A6NF89 314 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 SYNGR3O43761 229 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 TFP02787 698 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 FOSL1P15407 271 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF3P17036 446 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 CCNOP22674 350 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 WNT5AP41221 380 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 EFNA4P52798 201 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 HIST1H3AP68431 136 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 TEKQ02763 1124 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 CRMP1Q14194 572 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 CLEC12BQ2HXU8 276 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 HIST2H3PS2Q5TEC6 136 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 OTPQ5XKR4 325 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 SLC27A4Q6P1M0 643 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 UNQ6126/PRO20091Q6UXV3 157 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 HIST2H3AQ71DI3 136 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 HIPK1Q86Z02 1210 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 C1orf174Q8IYL3 243 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 IQCF1Q8N6M8 205 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 PROKR2Q8NFJ6 384 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 DGCR14Q96DF8 476 aaKnown RBP12.93□□□□□ -0.34
CPSF1-208ENST00000532560 CENPNQ96H22 339 aaPredicted RBP12.93□□□□□ -0.34
CPSF1-208ENST00000532560 SORCS2Q96PQ0 1159 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 ANKRD60Q9BZ19 345 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 NMNAT2Q9BZQ4 307 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 KIF17Q9P2E2 1029 aa12.93□□□□□ -0.34
CPSF1-208ENST00000532560 EIF3KQ9UBQ5 218 aaKnown RBP12.93□□□□□ -0.34
CPSF1-208ENST00000532560 FLNAP21333 2647 aaKnown RBP12.92□□□□□ -0.34
CPSF1-208ENST00000532560 MAP1AP78559 2803 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-208ENST00000532560 IGLV3-9A0A075B6K5 115 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 TRIM64A6NGJ6 449 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 TRIM64BA6NI03 449 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 RER1O15258 196 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 SMIM18P0DKX4 95 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF250P15622 560 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 HTR5AP47898 357 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 ERVS71-1P61550 626 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 DBPQ10586 325 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-208ENST00000532560 APOFQ13790 326 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 CCDC92Q53HC0 331 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-208ENST00000532560 FOXB2Q5VYV0 432 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 ZBTB49Q6ZSB9 765 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF101Q8IZC7 436 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 PARP8Q8N3A8 854 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 GJC3Q8NFK1 279 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 OR10H5Q8NGA6 315 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 OR9Q1Q8NGQ5 310 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 LRTOMTQ8WZ04 291 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 COX4I2Q96KJ9 171 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 SYT3Q9BQG1 590 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 HDHD2Q9H0R4 259 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 GABARAPL1Q9H0R8 117 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 OR51B6Q9H340 312 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 DYNLRB1Q9NP97 96 aa12.92□□□□□ -0.34
CPSF1-208ENST00000532560 MRPL22Q9NWU5 206 aaKnown RBP12.92□□□□□ -0.34
CPSF1-208ENST00000532560 RTTNQ86VV8 2226 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 FAM171A2A8MVW0 826 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 H3BSA7 217 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 M0R233 179 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 SSX4O60224 188 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 F12P00748 615 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-208ENST00000532560 HLA-DQA2P01906 255 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 LCKP06239 509 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 CSF3P09919 207 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 SPI1P17947 270 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 POU1F1P28069 291 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 GSTT1P30711 240 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 PYCR1P32322 319 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 GGT2P36268 569 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 DAPP51397 102 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 KLF3P57682 345 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-208ENST00000532560 SELENOVP59797 346 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 CDK5Q00535 292 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 GINS1Q14691 196 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 CNPY1Q3B7I2 92 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 ELFN2Q5R3F8 820 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 SLC18B1Q6NT16 456 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 ARL9Q6T311 187 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 RFPL4BQ6ZWI9 263 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 AMIGO2Q86SJ2 522 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 LRP11Q86VZ4 500 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 ZDHHC13Q8IUH4 622 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 GALNT4Q8N4A0 578 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 OR1J1Q8NGS3 322 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 OR1F12Q8NHA8 337 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 C18orf12Q96KH6 178 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 C4orf45Q96LM5 186 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 CNBD2Q96M20 576 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 COQ7Q99807 217 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 VRK1Q99986 396 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-208ENST00000532560 ELOVL3Q9HB03 270 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 SLC25A19Q9HC21 320 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 UBAP1Q9NZ09 502 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 MYEF2Q9P2K5 600 aaKnown RBP12.91□□□□□ -0.34
CPSF1-208ENST00000532560 CYB5R1Q9UHQ9 305 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms