RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 RFPL4BQ6ZWI9 263 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 HIST2H3AQ71DI3 136 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 TGIF2LYQ8IUE0 185 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 ZCCHC24Q8N2G6 241 aaKnown RBP11.49□□□□□ -0.57
VPS28-210ENST00000529182 GJC3Q8NFK1 279 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 OR1J1Q8NGS3 322 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 OR6K6Q8NGW6 343 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 OR1F12Q8NHA8 337 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 ABHD4Q8TB40 342 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 Q96MF0 132 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 DOK1Q99704 481 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 CDADC1Q9BWV3 514 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 OR51V1Q9H2C8 321 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 HINT3Q9NQE9 182 aaKnown RBP11.49□□□□□ -0.57
VPS28-210ENST00000529182 TVP23BQ9NYZ1 205 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 CYB5R1Q9UHQ9 305 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 DUSP13Q9UII6 198 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 NDRG4Q9ULP0 352 aaKnown RBP11.49□□□□□ -0.57
VPS28-210ENST00000529182 COMMD3-BMI1R4GMX3 469 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 PMF1-BGLAPU3KQ54 211 aa11.49□□□□□ -0.57
VPS28-210ENST00000529182 ARFGEF3Q5TH69 2177 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 VSTM5A8MXK1 200 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 PRR23D1E9PI22 279 aaPredicted RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 H7C417 338 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 CLPTM1O96005 669 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 PRR23D2P0DMB1 279 aaPredicted RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 COX5BP10606 129 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 IGFBP5P24593 272 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 FMO3P31513 532 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 POLR2IP36954 125 aaKnown RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 RAD52P43351 418 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 ALDH3B1P43353 468 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 ESRRGP62508 458 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 GABPB1Q06547 395 aaPredicted RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 MAD2L1BPQ15013 274 aaPredicted RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 RAB35Q15286 201 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 SNAPC1Q16533 368 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 ZSCAN26Q16670 478 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 ALKBH6Q3KRA9 238 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 ELFN2Q5R3F8 820 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 CPOQ8IVL8 374 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 BBS1Q8NFJ9 593 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 OR2AJ1Q8NGZ0 328 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 SLC25A40Q8TBP6 338 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 PLEKHA8Q96JA3 519 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 MAP6Q96JE9 813 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 C4orf45Q96LM5 186 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 SORCS2Q96PQ0 1159 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 VRK1Q99986 396 aaPredicted RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 OSBPL10Q9BXB5 764 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 BCL2L14Q9BZR8 327 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 EIF3KQ9UBQ5 218 aaKnown RBP11.48□□□□□ -0.57
VPS28-210ENST00000529182 GRIP1Q9Y3R0 1128 aa11.48□□□□□ -0.57
VPS28-210ENST00000529182 TRIM64A6NGJ6 449 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 TRIM64BA6NI03 449 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 SSX4O60224 188 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 GLCEO94923 617 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 ABHD16AO95870 558 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 ADRA2AP08913 450 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 SPARCP09486 303 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 BMP4P12644 408 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 PAICSP22234 425 aaKnown RBP11.47□□□□□ -0.57
VPS28-210ENST00000529182 MPV17P39210 176 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 KLHL12Q53G59 568 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 TMEM255AQ5JRV8 349 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 PRSS57Q6UWY2 283 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 BCDIN3DQ7Z5W3 292 aaKnown RBP11.47□□□□□ -0.57
VPS28-210ENST00000529182 LURAP1LQ8IV03 231 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 C10orf67Q8IYJ2 551 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 OR10S1Q8NGN2 331 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 ZMYND19Q96E35 227 aaPredicted RBP11.47□□□□□ -0.57
VPS28-210ENST00000529182 PITX2Q99697 317 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 HDHD2Q9H0R4 259 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 TPK1Q9H3S4 243 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 POFUT1Q9H488 388 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 RIBC2Q9H4K1 309 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 DYNLRB1Q9NP97 96 aa11.47□□□□□ -0.57
VPS28-210ENST00000529182 PNRC2Q9NPJ4 139 aaKnown RBP11.47□□□□□ -0.57
VPS28-210ENST00000529182 A0A1W2PPW3 197 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 ZAR1LA6NP61 321 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 ZNF593O00488 134 aaPredicted RBP11.46□□□□□ -0.57
VPS28-210ENST00000529182 EI24O14681 340 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 PRKYO43930 277 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 ZNF250P15622 560 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 GSTT1P30711 240 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 ENTPD1P49961 510 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 PPOXP50336 477 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 NUDT6P53370 316 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 PPP1CBP62140 327 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 CLEC12BQ2HXU8 276 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 RSPO1Q2MKA7 263 aaPredicted RBP11.46□□□□□ -0.57
VPS28-210ENST00000529182 SLX4IPQ5VYV7 408 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 CXXC5Q7LFL8 322 aaKnown RBP11.46□□□□□ -0.57
VPS28-210ENST00000529182 DCXRQ7Z4W1 244 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 ERI1Q8IV48 349 aaKnown RBP11.46□□□□□ -0.57
VPS28-210ENST00000529182 ZNF525Q8N782 197 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 SYNPRQ8TBG9 265 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 MARS2Q96GW9 593 aaKnown RBP11.46□□□□□ -0.57
VPS28-210ENST00000529182 COQ7Q99807 217 aa11.46□□□□□ -0.57
VPS28-210ENST00000529182 RBM4BQ9BQ04 359 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms