RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 METAP1DQ6UB28 335 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-207ENST00000468384 NPSR1Q6W5P4 371 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF367Q7RTV3 350 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 PEX5LQ8IYB4 626 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 TEX45Q8NA69 505 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 NHLRC2Q8NBF2 726 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 OR6Q1Q8NGQ2 317 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 OR4Q3Q8NH05 313 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 OR8U1Q8NH10 309 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 EXT2Q93063 718 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 SPSB1Q96BD6 273 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 PDLIM5Q96HC4 596 aaKnown RBP3.73□□□□□ -1.81
HMGB1-207ENST00000468384 GRAMD2BQ96HH9 432 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 OXNAD1Q96HP4 312 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-207ENST00000468384 CDKN2AIPNLQ96HQ2 116 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 METTL2AQ96IZ6 378 aaKnown RBP3.73□□□□□ -1.81
HMGB1-207ENST00000468384 MS4A10Q96PG2 267 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 SIGLEC11Q96RL6 698 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 GFI1Q99684 422 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 OVOL2Q9BRP0 275 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 SPXQ9BT56 116 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 ALX4Q9H161 411 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-207ENST00000468384 MAP6D1Q9H9H5 199 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 EQTNQ9NQ60 294 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 ACTR3BQ9P1U1 418 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 HOOK1Q9UJC3 728 aaKnown RBP3.73□□□□□ -1.81
HMGB1-207ENST00000468384 LAMP5Q9UJQ1 280 aa3.73□□□□□ -1.81
HMGB1-207ENST00000468384 DNAH8Q96JB1 4490 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 IGLV3-32A0A0A0MS00 114 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 A0A1B0GVI7 797 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 LRIT2A6NDA9 550 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ERICH4A6NGS2 130 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 OR51F1A6NGY5 319 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 GJE1A6NN92 205 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 GOLGA8KD6RF30 607 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 GOLGA8TH3BQL2 631 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 IMPA2O14732 288 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 POLR2DO15514 142 aaKnown RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 FADS1O60427 444 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 GLRA3O75311 464 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 SAP30O75446 220 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 BCAS2O75934 225 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 INHBAP08476 426 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF35P13682 527 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 DRD5P21918 477 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 PAICSP22234 425 aaKnown RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 RPL22P35268 128 aaKnown RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 KCNJ1P48048 391 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 CEBPDP49716 269 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ARFIP1P53367 373 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 HAMPP81172 84 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 HTD2P86397 168 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 FKBP3Q00688 224 aaKnown RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 GLO1Q04760 184 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ACVR1Q04771 509 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 MRPL28Q13084 256 aaKnown RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 PTGR1Q14914 329 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 PDK3Q15120 406 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ARHGAP11BQ3KRB8 267 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 FAM91A1Q658Y4 838 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 CASP12Q6UXS9 341 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF841Q6ZN19 808 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZBTB49Q6ZSB9 765 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF627Q7L945 461 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 TMEM219Q86XT9 240 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 FAM219AQ8IW50 185 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 KLHL7Q8IXQ5 586 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 OR7G1Q8NGA0 311 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 OCC1Q8TAD7 63 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 UBALD1Q8TB05 177 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 SYNPRQ8TBG9 265 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 MAGEE2Q8TD90 523 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZFP90Q8TF47 636 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF317Q96PQ6 595 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 EGFL8Q99944 293 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 CRACR2AQ9BSW2 395 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 RAD21L1Q9H4I0 556 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 NINJ2Q9NZG7 142 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 PTTG2Q9NZH5 202 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-207ENST00000468384 TANC2Q9HCD6 1990 aa3.72□□□□□ -1.81
HMGB1-207ENST00000468384 A0A1W2PRB8 838 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 ZNF716A6NP11 495 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 WASHC1A8K0Z3 465 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 BTNL10A8MVZ5 291 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 BOLA2-SMG1P6H3BVE0 249 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 PPP6CO00743 305 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 GPR171O14626 319 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 EFNA2O43921 213 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 SUPT7LO94864 414 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 GPR75O95800 540 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 LGI1O95970 557 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 CALB1P05937 261 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 BCKDHAP12694 445 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 ZNF250P15622 560 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 CD1DP15813 335 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 CHRNB2P17787 502 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 CPN2P22792 545 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 IL12BP29460 328 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms