RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ANKRD61A6NGH8 418 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 HSPB2A8KAH6 182 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 FFAR1O14842 300 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ARPC1BO15143 372 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 DNASE1P24855 282 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 GIFP27352 417 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 UQCRC1P31930 480 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 CEBPGP53567 150 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 SOX8P57073 446 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 RPS23P62266 143 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 BDH1Q02338 343 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 FMODQ06828 376 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 RNPS1Q15287 305 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 HSPB2Q16082 182 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 CD300LDQ6UXZ3 194 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 Q6ZTK2 550 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 WFDC8Q8IUA0 241 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OR13C5Q8NGS8 318 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF286AQ9HBT8 521 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 EHFQ9NZC4 300 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OR6C6A6NF89 314 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ZSCAN5BA6NJL1 495 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 GZMMP51124 257 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 SLC25A1P53007 311 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ELFN2Q5R3F8 820 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 HACD4Q5VWC8 232 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ADGRE4PQ86SQ3 457 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 GCNT2Q8N0V5 402 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 LSMEM1Q8N8F7 131 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 AKR7LQ8NHP1 331 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 KISS1RQ969F8 398 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OPALINQ96PE5 141 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 PHB2Q99623 299 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 DDA1Q9BW61 102 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 PBOV1Q9GZY1 135 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 CCDC86Q9H6F5 360 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 RAB22AQ9UL26 194 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 K7ESF4 209 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 M0R1B8 84 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 PLPP3O14495 311 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 IFNA7P01567 189 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 FAM157BP0CG42 384 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 SMIM10L1P0DMW3 83 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 APEHP13798 732 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ADH6P28332 368 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 PTGS2P35354 604 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 RBM39Q14498 530 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 C1QL3Q5VWW1 255 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 DESI1Q6ICB0 168 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ATG4DQ86TL0 474 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 BPIFB2Q8N4F0 458 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OR1M1Q8NGA1 313 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OR2G2Q8NGZ5 317 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 SMIM10Q96HG1 83 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 SIAEQ9HAT2 523 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 TRAPPC2LQ9UL33 140 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OR6C68A6NDL8 312 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 PAHP00439 452 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 UBBP0CG47 229 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 IL7P13232 177 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 APEX1P27695 318 aaKnown RBP6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF81P51508 661 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 SKP2Q13309 424 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 TNK1Q13470 666 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 METTL11BQ5VVY1 283 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 APOOLQ6UXV4 268 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 KIF18BQ86Y91 864 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 OTOSQ8NHW6 89 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 TSPAN32Q96QS1 320 aa6.66□□□□□ -1.34
SYNE1-213ENST00000448038 ATG12O94817 140 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 UBL3O95164 117 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 SELEP16581 610 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 CD53P19397 219 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 PTPN6P29350 595 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 RBP2P50120 134 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF121P58317 390 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-213ENST00000448038 MLF1P58340 268 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 TAS2R31P59538 309 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ANKRD16Q6P6B7 361 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 CHPT1Q8WUD6 406 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 HINT2Q9BX68 163 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ZMAT3Q9HA38 289 aaKnown RBP6.65□□□□□ -1.34
SYNE1-213ENST00000448038 FAM186AA6NE01 2351 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 XRCC2O43543 280 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF780AO75290 641 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-213ENST00000448038 TK1P04183 234 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 LIPCP11150 499 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ZFP36L2P47974 494 aaKnown RBP6.65□□□□□ -1.34
SYNE1-213ENST00000448038 TAS2R46P59540 309 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 FABP5Q01469 135 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 AQP6Q13520 282 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 OR8G1Q15617 311 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 PRSS53Q2L4Q9 553 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 SLC22A25Q6T423 547 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 OR4M1Q8NGD0 313 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 SLC25A46Q96AG3 418 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 REEP6Q96HR9 211 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF471Q9BX82 626 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-213ENST00000448038 NELFAQ9H3P2 528 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 RANBP3Q9H6Z4 567 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms