RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SHPKQ9UHJ6 478 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 APEHP13798 732 aaKnown RBP20.1■□□□□ 0.81
TRIM28-202ENST00000341753 SSBP1Q04837 148 aaKnown RBP20.1■□□□□ 0.81
TRIM28-202ENST00000341753 TMED6Q8WW62 240 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 FAM46BQ96A09 425 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 PHYHIPLQ96FC7 376 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 TREM1Q9NP99 234 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 CKLFQ9UBR5 152 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 ZNF629Q9UEG4 869 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-202ENST00000341753 C5orf51A6NDU8 294 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 C2orf74A8MZ97 194 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 OR6A2O95222 327 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 PNMTP11086 282 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 NFYBP25208 207 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 EIF2B1Q14232 305 aaKnown RBP20.09■□□□□ 0.81
TRIM28-202ENST00000341753 CHRDL2Q6WN34 429 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 PRR22Q8IZ63 422 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 OR5AP2Q8NGF4 316 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 NUDCD2Q8WVJ2 157 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 IFT22Q9H7X7 185 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 SLC17A5Q9NRA2 495 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 SDK1Q7Z5N4 2213 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 C9orf170A2RU37 121 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 WIPF3A6NGB9 483 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 TMEM200CA6NKL6 621 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 SULT1C2O00338 296 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 ZNF208O43345 1280 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 SLC16A7O60669 478 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 TXNDC12O95881 172 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 GPR3P46089 330 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 RNASE10Q5GAN6 216 aaKnown RBP20.09■□□□□ 0.81
TRIM28-202ENST00000341753 UQCC3Q6UW78 93 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 FJX1Q86VR8 437 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 CHST4Q8NCG5 386 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 COA4Q9NYJ1 87 aa20.09■□□□□ 0.81
TRIM28-202ENST00000341753 MPZL1O95297 269 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 SPP1P10451 314 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 ST6GAL1P15907 406 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 ADGRE4PQ86SQ3 457 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 ZNF321PQ8N8H1 164 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 ELP5Q8TE02 316 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 ROBO4Q8WZ75 1007 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 DCUN1D4Q92564 292 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 SCPEP1Q9HB40 452 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 PRMT8Q9NR22 394 aaPredicted RBP20.08■□□□□ 0.81
TRIM28-202ENST00000341753 PCOLCE2Q9UKZ9 415 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 FAM96BQ9Y3D0 163 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 CSAG2Q9Y5P2 127 aa20.08■□□□□ 0.81
TRIM28-202ENST00000341753 OR2T1O43869 369 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 SKP2Q13309 424 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 ZNF528Q3MIS6 628 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 LPCAT3Q6P1A2 487 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 TRAPPC6BQ86SZ2 158 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 ZNF679Q8IYX0 411 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 AVL9Q8NBF6 648 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 OR4D6Q8NGJ1 314 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 SLC37A2Q8TED4 501 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 RTN4RQ9BZR6 473 aa20.08■□□□□ 0.8
TRIM28-202ENST00000341753 MRPL22Q9NWU5 206 aaKnown RBP20.08■□□□□ 0.8
TRIM28-202ENST00000341753 A0A0J9YY10 115 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 RAB19A4D1S5 217 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 XKRYO14609 159 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 CD74P04233 296 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 GABRG2P18507 467 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 CD96P40200 585 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 PNLIPRP2P54317 469 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 TOMM34Q15785 309 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-202ENST00000341753 SLC25A42Q86VD7 318 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 FAM160A2Q8N612 972 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-202ENST00000341753 RNF128Q8TEB7 428 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 RSC1A1Q92681 617 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 SEMA6CQ9H3T2 930 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 PRR13Q9NZ81 148 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 ERCC1P07992 297 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-202ENST00000341753 DNASE1L1P49184 302 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 SRSF4Q08170 494 aaKnown RBP20.07■□□□□ 0.8
TRIM28-202ENST00000341753 OR4A4PQ8NGN8 299 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 OR13C3Q8NGS6 347 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 ZC3H10Q96K80 434 aaKnown RBP20.07■□□□□ 0.8
TRIM28-202ENST00000341753 NUDT9Q9BW91 350 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 PRTFDC1Q9NRG1 225 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 EMC9Q9Y3B6 208 aa20.07■□□□□ 0.8
TRIM28-202ENST00000341753 LOC101059948A0A1B0GTJ6 334 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 CD2P06729 351 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 CFPP27918 469 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 ARMC10Q8N2F6 343 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 OR10R2Q8NGX6 335 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 FOXRED1Q96CU9 486 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-202ENST00000341753 PIK3IP1Q96FE7 263 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 PHB2Q99623 299 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 CD207Q9UJ71 328 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 STK17BO94768 372 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 FARS2O95363 451 aaKnown RBP20.06■□□□□ 0.8
TRIM28-202ENST00000341753 SLC18B1Q6NT16 456 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 TAF8Q7Z7C8 310 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 SPAG16Q8N0X2 631 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 BHLHE23Q8NDY6 225 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 METTL21AQ8WXB1 218 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 CYYR1Q96J86 154 aa20.06■□□□□ 0.8
TRIM28-202ENST00000341753 MYOZ1Q9NP98 299 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms