RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CRLF2Q9HC73 371 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 INPP5EQ9NRR6 644 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 CCDC59Q9P031 241 aaKnown RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 UPB1Q9UBR1 384 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 J3QRE1 110 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 DHHO43323 396 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 LALBAP00709 142 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 MRPS15P82914 257 aaKnown RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 Q3ZCU0 254 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF404Q494X3 552 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 SLC25A47Q6Q0C1 308 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 PHC2Q8IXK0 858 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 RFLNBQ8N5W9 214 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 SLC26A10Q8NG04 563 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 OR6F1Q8NGZ6 308 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 RNF122Q9H9V4 155 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 MRPL22Q9NWU5 206 aaKnown RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 SH3BGRL2Q9UJC5 107 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 PNMA8CA0A1B0GUJ8 204 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 J3QLW9 94 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 PSMD9O00233 223 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 GABRA1P14867 456 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF19P17023 458 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 WNT4P56705 351 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 GNG2P59768 71 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 GALK2Q01415 458 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 GALEQ14376 348 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 CDK10Q15131 360 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF124Q15973 351 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 HIST3H3Q16695 136 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 SPATC1Q76KD6 591 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 NUFIP2Q7Z417 695 aaKnown RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 C11orf40Q8WZ69 217 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 WNT2BQ93097 391 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 MRPL48Q96GC5 212 aaKnown RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 GMPPAQ96IJ6 420 aaPredicted RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 COQ7Q99807 217 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 KCNN2Q9H2S1 579 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 EMC7Q9NPA0 242 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 KCNG2Q9UJ96 466 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 FOXD3Q9UJU5 478 aaPredicted RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 IKZF2Q9UKS7 526 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 COPS3Q9UNS2 423 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 SF3B6Q9Y3B4 125 aaKnown RBP8.86□□□□□ -0.99
HMGB3-201ENST00000325307 EMC9Q9Y3B6 208 aa8.86□□□□□ -0.99
HMGB3-201ENST00000325307 GTF3C1Q12789 2109 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 PRRG2O14669 202 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 MAGEB4O15481 346 aaPredicted RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 AGTR1P30556 359 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 MLLT11Q13015 90 aaPredicted RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 TSPO2Q5TGU0 170 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 C9orf135Q5VTT2 229 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 SSX6Q7RTT6 188 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 LINC00346Q8IVM7 164 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 C9orf106Q8NAJ2 232 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 MCFD2Q8NI22 146 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 FAM57AQ8TBR7 257 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 SPRYD4Q8WW59 207 aaPredicted RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 CAPSLQ8WWF8 208 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 GNG8Q9UK08 70 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 CACNG2Q9Y698 323 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 TMEM14AQ9Y6G1 99 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 CACNA1CQ13936 2221 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 TMEM129A0AVI4 362 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 WDR1O75083 606 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 CPEP16870 476 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 EDNRAP25101 427 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 TDGF1P3P51864 188 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF85Q03923 595 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 EIF2B1Q14232 305 aaKnown RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 CEACAM16Q2WEN9 425 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 TP53I3Q53FA7 332 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 LIPKQ5VXJ0 399 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 ADGRE4PQ86SQ3 457 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 MARVELD3Q96A59 401 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF837Q96EG3 531 aaPredicted RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 C4orf36Q96KX1 117 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 TM9SF2Q99805 663 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 ISG20L2Q9H9L3 353 aaKnown RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 GLRX2Q9NS18 164 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 SLC7A10Q9NS82 523 aa8.85□□□□□ -0.99
HMGB3-201ENST00000325307 CAB39Q9Y376 341 aaPredicted RBP8.85□□□□□ -0.99
HMGB3-201ENST00000325307 ERVH48-1M5A8F1 160 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 MT-ND5P03915 603 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 SERPINB10P48595 397 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 TGM4P49221 684 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 RBPJQ06330 500 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 NSUN5P2Q63ZY6 315 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 SLC18B1Q6NT16 456 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF322Q6U7Q0 402 aaPredicted RBP8.84□□□□□ -0.99
HMGB3-201ENST00000325307 CDC20BQ86Y33 519 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 KLBQ86Z14 1044 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ASCC1Q8N9N2 400 aaKnown RBP8.84□□□□□ -0.99
HMGB3-201ENST00000325307 IL17RDQ8NFM7 739 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 OR2AJ1Q8NGZ0 328 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 RNF170Q96K19 258 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 DCLRE1CQ96SD1 692 aaKnown RBP8.84□□□□□ -0.99
HMGB3-201ENST00000325307 WACQ9BTA9 647 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 KLHDC2Q9Y2U9 406 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ZNF587BE7ETH6 402 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms