RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CRYBA2P53672 197 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 CTXN1P60606 82 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 ST3GAL3Q11203 375 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 PIN1Q13526 163 aaPredicted RBP12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 CYLC2Q14093 348 aaPredicted RBP12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 AGBL2Q5U5Z8 902 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 KLBQ86Z14 1044 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 OR5L1Q8NGL2 311 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 OR13G1Q8NGZ3 307 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 ZDHHC16Q969W1 377 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 NEIL1Q96FI4 390 aaPredicted RBP12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 KIF17Q9P2E2 1029 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 ATPIF1Q9UII2 106 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 CMYA5Q8N3K9 4069 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 TRAV40A0A0B4J280 105 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 KIR2DS1A0A191URI9 304 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 SRRM5B3KS81 715 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 M0QZ24 198 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 TIMM23O14925 209 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 RPL15P61313 204 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 ZNF181Q2M3W8 571 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 GPR157Q5UAW9 335 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 ERICH5Q6P6B1 374 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 TMEM86BQ8N661 226 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 ATG16L2Q8NAA4 619 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 PCYOX1LQ8NBM8 494 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 OR8B3Q8NGG8 313 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 WFDC12Q8WWY7 111 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 OR8B2Q96RD0 313 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 NDEL1Q9GZM8 345 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 TMEM165Q9HC07 324 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 STARD10Q9Y365 291 aa12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 PRKDCP78527 4128 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-201ENST00000301897 IGHV3OR16-10A0A075B7F0 116 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 FAM181BA6NEQ2 426 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 HOXA3O43365 443 aaPredicted RBP12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 NDUFA7O95182 113 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 IFI30P13284 250 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 OMGP23515 440 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 SLC9A3P48764 834 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 RAG2P55895 527 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 AQP6Q13520 282 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 BEND6Q5SZJ8 279 aaPredicted RBP12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 OLFML2AQ68BL7 652 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 FBXW12Q6X9E4 464 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 VASH1Q7L8A9 365 aaPredicted RBP12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 OAFQ86UD1 273 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 CLDN22Q8N7P3 220 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 FAM156AQ8NDB6 213 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 OR8G5Q8NG78 346 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 OR10S1Q8NGN2 331 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 DACT3Q96B18 629 aaPredicted RBP12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 RASD2Q96D21 266 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 MEGF10Q96KG7 1140 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 CCT8L2Q96SF2 557 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 ECSITQ9BQ95 431 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 SLC30A2Q9BRI3 323 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 NUDT16L1Q9BRJ7 211 aaKnown RBP12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 MMP27Q9H306 513 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 POFUT1Q9H488 388 aa12.36□□□□□ -0.43
CCDC88B-201ENST00000301897 XKRYO14609 159 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 PHYHO14832 338 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 TNFRSF1BP20333 461 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 PITPNBP48739 271 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 HNRNPA0Q13151 305 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 PDCD1Q15116 288 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 TTMPQ5BVD1 217 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 NANOGP8Q6NSW7 305 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 BRICD5Q6PL45 260 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 POU5F2Q8N7G0 328 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 LRRC75AQ8NAA5 344 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 OR8J3Q8NGG0 315 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 DYDC1Q8WWB3 177 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 FAM71F1Q96KD3 344 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 PRRC1Q96M27 445 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 ZNF582Q96NG8 517 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 CITED1Q99966 193 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 TMEM246Q9BRR3 403 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 EMC7Q9NPA0 242 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 MRGBPQ9NV56 204 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 GRHPRQ9UBQ7 328 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 CLN8Q9UBY8 286 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 POMT1Q9Y6A1 747 aa12.35□□□□□ -0.43
CCDC88B-201ENST00000301897 OR6C6A6NF89 314 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 ENSAO43768 121 aaKnown RBP12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 PIP5K1CO60331 668 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 SHOX2O60902 331 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 NPPAP01160 153 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 OR1E2P47887 323 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 LSM6P62312 80 aaKnown RBP12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 DEFB112Q30KQ8 113 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 ZNF404Q494X3 552 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 C1orf94Q6P1W5 598 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 IGFN1Q86VF2 1251 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 CALHM3Q86XJ0 350 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 RNF113BQ8IZP6 322 aaKnown RBP12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 KIR3DL3Q8N743 410 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 OR51A7Q8NH64 312 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 OR1F12Q8NHA8 337 aa12.34□□□□□ -0.43
CCDC88B-201ENST00000301897 ERGIC1Q969X5 290 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms