RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PCBD1P61457 104 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 PAX8Q06710 450 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 INTS11Q5TA45 600 aaKnown RBP16.3■□□□□ 0.2
CLN3-262ENST00000637699 Q6ZR03 302 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 PARP8Q8N3A8 854 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 OR10A6Q8NH74 314 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 ITLN1Q8WWA0 313 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 TMIGD2Q96BF3 282 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 SIGLEC11Q96RL6 698 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 RIMS3Q9UJD0 308 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 NPIPB13A6NJU9 1138 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 NPIPB4C9JG80 1138 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 ANGPT2O15123 496 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 EDF1O60869 148 aaKnown RBP16.29■□□□□ 0.2
CLN3-262ENST00000637699 GSTM3P21266 225 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 PIN1Q13526 163 aaPredicted RBP16.29■□□□□ 0.2
CLN3-262ENST00000637699 ENDOGQ14249 297 aaKnown RBP16.29■□□□□ 0.2
CLN3-262ENST00000637699 ALG10Q5BKT4 473 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 SPATC1Q76KD6 591 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 DPP10Q8N608 796 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 RASSF5Q8WWW0 418 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 LIPHQ8WWY8 451 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 STON2Q8WXE9 905 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 ALG12Q9BV10 488 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 RABEP2Q9H5N1 569 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 MAN2C1Q9NTJ4 1040 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 ZNF446Q9NWS9 450 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 MED31Q9Y3C7 131 aa16.29■□□□□ 0.2
CLN3-262ENST00000637699 PRKDCP78527 4128 aaKnown RBP16.29■□□□□ 0.2
CLN3-262ENST00000637699 NOTCH1P46531 2555 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 MDFIC2A0A1B0GVS7 189 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 CEACAM18A8MTB9 384 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 OR5F1O95221 314 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 IGF2P01344 180 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 MDH2P40926 338 aaKnown RBP16.28■□□□□ 0.2
CLN3-262ENST00000637699 RPL27P61353 136 aaKnown RBP16.28■□□□□ 0.2
CLN3-262ENST00000637699 SRSF4Q08170 494 aaKnown RBP16.28■□□□□ 0.2
CLN3-262ENST00000637699 NFYCQ13952 458 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 C16orf87Q6PH81 154 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 IGFN1Q86VF2 1251 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 CMBLQ96DG6 245 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 OR2V2Q96R30 315 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 IL19Q9UHD0 177 aa16.28■□□□□ 0.2
CLN3-262ENST00000637699 NDRG4Q9ULP0 352 aaKnown RBP16.28■□□□□ 0.2
CLN3-262ENST00000637699 C12orf71A8MTZ7 269 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 TMEM178BH3BS89 294 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 PIP5K1CO60331 668 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 ZNF205O95201 554 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 SCG5P05408 212 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 WNT2P09544 360 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 MSR1P21757 451 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 CTXN1P60606 82 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 VMACQ2NL98 169 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 BTNL3Q6UXE8 466 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 C9orf139Q6ZV77 190 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 CCDC80Q76M96 950 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 NPEPL1Q8NDH3 523 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 SSBP3Q9BWW4 388 aaPredicted RBP16.27■□□□□ 0.2
CLN3-262ENST00000637699 EMC7Q9NPA0 242 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 TBCCD1Q9NVR7 557 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 LRCH1Q9Y2L9 728 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 HIF3AQ9Y2N7 669 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 STARD10Q9Y365 291 aa16.27■□□□□ 0.2
CLN3-262ENST00000637699 TRAV40A0A0B4J280 105 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 SURF4O15260 269 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 KITLGP21583 273 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 OR1E2P47887 323 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 HTR5AP47898 357 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 GZMMP51124 257 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 PAX2Q02962 417 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 FOXL2NBQ6ZUU3 175 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 MUC20Q8N307 709 aaPredicted RBP16.26■□□□□ 0.19
CLN3-262ENST00000637699 FNDC8Q8TC99 324 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 UPRTQ96BW1 309 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 GCM1Q9NP62 436 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 TNFRSF19Q9NS68 423 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 IL20RAQ9UHF4 553 aa16.26■□□□□ 0.19
CLN3-262ENST00000637699 A0A0G2JND7 137 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 HOXA3O43365 443 aaPredicted RBP16.25■□□□□ 0.19
CLN3-262ENST00000637699 PLATP00750 562 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 RPS2P15880 293 aaKnown RBP16.25■□□□□ 0.19
CLN3-262ENST00000637699 ERFP50548 548 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 MMP16P51512 607 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 C1orf94Q6P1W5 598 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 LRRN1Q6UXK5 716 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 SYT9Q86SS6 491 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 MICU2Q8IYU8 434 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 OR5AS1Q8N127 324 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 KIR3DL3Q8N743 410 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 ATG16L2Q8NAA4 619 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 ZNF420Q8TAQ5 688 aaPredicted RBP16.25■□□□□ 0.19
CLN3-262ENST00000637699 HAVCR1Q96D42 359 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 POLR2J2Q9GZM3 115 aaKnown RBP16.25■□□□□ 0.19
CLN3-262ENST00000637699 POLR2J3Q9H1A7 115 aaKnown RBP16.25■□□□□ 0.19
CLN3-262ENST00000637699 POLE4Q9NR33 117 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 BAG5Q9UL15 447 aa16.25■□□□□ 0.19
CLN3-262ENST00000637699 IGHV2-70DA0A0C4DH43 119 aa16.24■□□□□ 0.19
CLN3-262ENST00000637699 A0A0G2JK05 382 aa16.24■□□□□ 0.19
CLN3-262ENST00000637699 H7C1C5 153 aa16.24■□□□□ 0.19
CLN3-262ENST00000637699 DOK2O60496 412 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms