RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZSCAN5BA6NJL1 495 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 LRRC30A6NM36 301 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 FAM220BPB1ANY3 271 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 NDUFAB1O14561 156 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 EDF1O60869 148 aaKnown RBP9.81□□□□□ -0.84
COL6A3-213ENST00000493475 UBOX5O94941 541 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 SBK2P0C263 348 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 TSPAN19P0C672 248 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 KDELR2P33947 212 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 MPV17P39210 176 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 WNT5AP41221 380 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 OR1E2P47887 323 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 HTR5AP47898 357 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 MTNR1AP48039 350 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 RGS6P49758 472 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 SELENOWP63302 87 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 GUCY1A3Q02108 690 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 FMODQ06828 376 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 TRAM2Q15035 370 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 RABL3Q5HYI8 236 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 BRICD5Q6PL45 260 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 SLC25A47Q6Q0C1 308 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 ZNF730Q6ZMV8 503 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 RFPL4BQ6ZWI9 263 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 OR2Z1Q8NG97 314 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 SLC25A28Q96A46 364 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 PLEKHA8Q96JA3 519 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 DCLRE1CQ96SD1 692 aaKnown RBP9.81□□□□□ -0.84
COL6A3-213ENST00000493475 C20orf141Q9NUB4 165 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 PLEK2Q9NYT0 353 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 KIF17Q9P2E2 1029 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 IL19Q9UHD0 177 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 PURGQ9UJV8 347 aaKnown RBP9.81□□□□□ -0.84
COL6A3-213ENST00000493475 NUP50Q9UKX7 468 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 PPP1R3CQ9UQK1 317 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 TMEM5Q9Y2B1 443 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 UGT2A1Q9Y4X1 527 aa9.81□□□□□ -0.84
COL6A3-213ENST00000493475 LOC100509620A0A075B734 347 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 ELOVL7A1L3X0 281 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 J3QL48 77 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 GSTA4O15217 222 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 SGCEO43556 437 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 DOK2O60496 412 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 SHOX2O60902 331 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 TNFRSF1BP20333 461 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 MDH2P40926 338 aaKnown RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 BTG1P62324 171 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 UBA52P62987 128 aaKnown RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 AQP6Q13520 282 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 AWAT1Q58HT5 328 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 ZNF774Q6NX45 483 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 PGM2L1Q6PCE3 622 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 DNM1P34Q6PK57 102 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 FKBP9P1Q75LS8 142 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 ZNF771Q7L3S4 317 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 NLRC3Q7RTR2 1065 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 NRMQ8IXM6 262 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 OFCC1Q8IZS5 231 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 C1orf87Q8N0U7 546 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 OR51A7Q8NH64 312 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 C10orf82Q8WW14 230 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 GEMIN6Q8WXD5 167 aaKnown RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 ACOT11Q8WXI4 607 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 MS4A7Q9GZW8 240 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 WNT5BQ9H1J7 359 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 VIPAS39Q9H9C1 493 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 MSL2Q9HCI7 577 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 POLE4Q9NR33 117 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 IL20RAQ9UHF4 553 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 LRCH1Q9Y2L9 728 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 POLR1DQ9Y2S0 133 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 FAM32AQ9Y421 112 aaKnown RBP9.8□□□□□ -0.84
COL6A3-213ENST00000493475 CACNG2Q9Y698 323 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 TENM1Q9UKZ4 2725 aa9.8□□□□□ -0.84
COL6A3-213ENST00000493475 SLC22A2O15244 555 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 IRF2P14316 349 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 SRP9P49458 86 aaKnown RBP9.79□□□□□ -0.84
COL6A3-213ENST00000493475 GZMMP51124 257 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 PRKCDQ05655 676 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 BAMBIQ13145 260 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 CDK5R2Q13319 367 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 TTMPQ5BVD1 217 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 GPR139Q6DWJ6 353 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 C1orf229Q6ZS94 237 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-213ENST00000493475 FOXL2NBQ6ZUU3 175 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 TSPYL5Q86VY4 417 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-213ENST00000493475 CALHM3Q86XJ0 350 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 ATG16L2Q8NAA4 619 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 GTF3AQ92664 365 aaKnown RBP9.79□□□□□ -0.84
COL6A3-213ENST00000493475 PTP4A1Q93096 173 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 RASD2Q96D21 266 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 NMD3Q96D46 503 aaKnown RBP9.79□□□□□ -0.84
COL6A3-213ENST00000493475 ZNF570Q96NI8 536 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 TMEM120AQ9BXJ8 343 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 ANKRD19PQ9H560 264 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 PATZ1Q9HBE1 687 aaKnown RBP9.79□□□□□ -0.84
COL6A3-213ENST00000493475 ATPIF1Q9UII2 106 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 KLHL21Q9UJP4 597 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 PPIAL4AQ9Y536 164 aa9.79□□□□□ -0.84
COL6A3-213ENST00000493475 MGAM2Q2M2H8 2515 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms