RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PPP1R3CQ9UQK1 317 aa12.81□□□□□ -0.36
MCF2L-228ENST00000487354 ANGPT4Q9Y264 503 aa12.81□□□□□ -0.36
MCF2L-228ENST00000487354 DNAH3Q8TD57 4116 aa12.81□□□□□ -0.36
MCF2L-228ENST00000487354 KIR2DS1A0A191URI9 304 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 NPIPB13A6NJU9 1138 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 NPIPB4C9JG80 1138 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 M0QX08 132 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 OR7A10O76100 309 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 HIST1H2ABP04908 130 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 MELTFP08582 738 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 TNFRSF1AP19438 455 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 TAF11Q15544 211 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 RUSC1-AS1Q66K80 236 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 EPGNQ6UW88 154 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 UNQ6126/PRO20091Q6UXV3 157 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 HIST3H2AQ7L7L0 130 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 NKAIN4Q8IVV8 208 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 MUC20Q8N307 709 aaPredicted RBP12.8□□□□□ -0.36
MCF2L-228ENST00000487354 FITM2Q8N6M3 262 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 ZNF420Q8TAQ5 688 aaPredicted RBP12.8□□□□□ -0.36
MCF2L-228ENST00000487354 LIPHQ8WWY8 451 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 HIST1H2ACQ93077 130 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 KCNN2Q9H2S1 579 aa12.8□□□□□ -0.36
MCF2L-228ENST00000487354 TIMM23O14925 209 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 CLPXO76031 633 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 CYB5R3P00387 301 aaPredicted RBP12.79□□□□□ -0.36
MCF2L-228ENST00000487354 MT-ND1P03886 318 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 RPS2P15880 293 aaKnown RBP12.79□□□□□ -0.36
MCF2L-228ENST00000487354 FUT1P19526 365 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 PROK1P58294 105 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 RUNDC3AQ59EK9 446 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 BTNL3Q6UXE8 466 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 HDDC2Q7Z4H3 204 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 TMEM255BQ8WV15 326 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 THOC1Q96FV9 657 aaKnown RBP12.79□□□□□ -0.36
MCF2L-228ENST00000487354 TMEM246Q9BRR3 403 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 CDADC1Q9BWV3 514 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 ELOVL3Q9HB03 270 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 MAN2C1Q9NTJ4 1040 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 TBCCD1Q9NVR7 557 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 TIMM10BQ9Y5J6 103 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 PLXNB1O43157 2135 aa12.79□□□□□ -0.36
MCF2L-228ENST00000487354 TMEM120BA0PK00 339 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 SLC22A31A6NKX4 558 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 C22orf46C9J442 243 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 H0YL77 283 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 ABHD16AO95870 558 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 IGF2P01344 180 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 TNFSF4P23510 183 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 ARHGDIAP52565 204 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 FGF12P61328 243 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 CD47Q08722 323 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 ZNF404Q494X3 552 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 FAM201AQ5SY85 155 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 FAM205BPQ63HN1 556 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 WDR93Q6P2C0 686 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 ZER1Q7Z7L7 766 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 TMEM86BQ8N661 226 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 C11orf65Q8NCR3 313 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 NPEPL1Q8NDH3 523 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 LINC01006Q8NI28 216 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 CMBLQ96DG6 245 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 NUDT16L1Q9BRJ7 211 aaKnown RBP12.78□□□□□ -0.36
MCF2L-228ENST00000487354 TXNIPQ9H3M7 391 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 NANOGQ9H9S0 305 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 NOX4Q9NPH5 578 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 CCDC167Q9P0B6 97 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.78□□□□□ -0.36
MCF2L-228ENST00000487354 CORO2BQ9UQ03 480 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 STARD10Q9Y365 291 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 USH1CQ9Y6N9 552 aa12.78□□□□□ -0.36
MCF2L-228ENST00000487354 GSTM3P21266 225 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 CPT2P23786 658 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 PMELP40967 661 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 GNB2P62879 340 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 LAPTM4AQ15012 233 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 FBLN7Q53RD9 439 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 ZNF841Q6ZN19 808 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 LRRC75AQ8NAA5 344 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 OR10AD1Q8NGE0 317 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 ZDHHC16Q969W1 377 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 HAVCR1Q96D42 359 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 SGTBQ96EQ0 304 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 NEIL1Q96FI4 390 aaPredicted RBP12.77□□□□□ -0.37
MCF2L-228ENST00000487354 MEGF10Q96KG7 1140 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 EBF4Q9BQW3 602 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 ALG12Q9BV10 488 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 CENPHQ9H3R5 247 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 STX18Q9P2W9 335 aaKnown RBP12.77□□□□□ -0.37
MCF2L-228ENST00000487354 RNF114Q9Y508 228 aa12.77□□□□□ -0.37
MCF2L-228ENST00000487354 TET2Q6N021 2002 aaPredicted RBP12.77□□□□□ -0.37
MCF2L-228ENST00000487354 TNFRSF13BO14836 293 aaPredicted RBP12.76□□□□□ -0.37
MCF2L-228ENST00000487354 MLNRO43193 412 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 PIP5K1CO60331 668 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 FSTL3O95633 263 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 SFTPBP07988 381 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 COX5BP10606 129 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 MMP9P14780 707 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 FUT4P22083 530 aa12.76□□□□□ -0.37
MCF2L-228ENST00000487354 RBM34P42696 430 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms