RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 POFUT2Q9Y2G5 429 aa6.23□□□□□ -1.41
USP54-208ENST00000461520 NDUFAF1Q9Y375 327 aa6.23□□□□□ -1.41
USP54-208ENST00000461520 CMAHPQ9Y471 501 aa6.23□□□□□ -1.41
USP54-208ENST00000461520 YLPM1P49750 1951 aaKnown RBP6.23□□□□□ -1.41
USP54-208ENST00000461520 SVEP1Q4LDE5 3571 aa6.23□□□□□ -1.41
USP54-208ENST00000461520 ALPK2Q86TB3 2170 aa6.23□□□□□ -1.41
USP54-208ENST00000461520 LRRN3E7EW58 273 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 M0QX08 132 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 M0R3H8 397 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ANGPT2O15123 496 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ENTPD5O75356 428 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 SEC14L2O76054 403 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 UBL3O95164 117 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 OR6A2O95222 327 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 RAB36O95755 333 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 TGFAP01135 160 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 VIMP08670 466 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 TACSTD2P09758 323 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 NPSP0C0P6 89 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ADORA3P0DMS8 318 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 CD79AP11912 226 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ZNF35P13682 527 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 B4GALT1P15291 398 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ZNF14P17017 642 aaPredicted RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 GLRXP35754 106 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 CSNK1A1P48729 337 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 RAB1AP62820 205 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 HOXA4Q00056 320 aaPredicted RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 ZP4Q12836 540 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 CYP51A1Q16850 503 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 TRMT5Q32P41 509 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 ZIK1Q3SY52 487 aaPredicted RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 TTMPQ5BVD1 217 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ENTPD8Q5MY95 495 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 FAM120AOSQ5T036 256 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 KRT80Q6KB66 452 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 TTC33Q6PID6 262 aaPredicted RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 UGT2A3Q6UWM9 527 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 Q6ZWC4 215 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 PIWIL3Q7Z3Z3 882 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 DHDDSQ86SQ9 333 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 PATL1Q86TB9 770 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 ARIH2OSQ8N7S6 290 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 PNLDC1Q8NA58 520 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 OR6T1Q8NGN1 323 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 OR6N1Q8NGY5 312 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 OR6X1Q8NH79 312 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 RASSF5Q8WWW0 418 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 MRPL24Q96A35 216 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 TXNDC15Q96J42 360 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 MPP4Q96JB8 637 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 MAGEB18Q96M61 343 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 CGREF1Q99674 301 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 SLC19A3Q9BZV2 496 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ZNF385DQ9H6B1 395 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 KAT8Q9H7Z6 458 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 CHODLQ9H9P2 273 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 DYNLRB1Q9NP97 96 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 NRIP3Q9NQ35 241 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 NANSQ9NR45 359 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 INTS9Q9NV88 658 aaKnown RBP6.22□□□□□ -1.41
USP54-208ENST00000461520 GLTPQ9NZD2 209 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 ZNF224Q9NZL3 707 aa6.22□□□□□ -1.41
USP54-208ENST00000461520 SH3PXD2BA1X283 911 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 CPSF4LA6NMK7 179 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 HMGB1P1B2RPK0 211 aaPredicted RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 C11orf98E9PRG8 122 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 M0R233 179 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SYNGR3O43761 229 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SERPINI2O75830 405 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 OPN1SWP03999 348 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 IGFBP1P08833 259 aaPredicted RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 ADRA2AP08913 450 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 PTDSS1P48651 473 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 BIDP55957 195 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 MTPNP58546 118 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 RPS23P62266 143 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 GALK2Q01415 458 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SELPLGQ14242 412 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 NPTX1Q15818 432 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 ZNF74Q16587 644 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 INTS11Q5TA45 600 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 METTL21CQ5VZV1 264 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 WDR88Q6ZMY6 472 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SLC35D2Q76EJ3 337 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 WDFY1Q8IWB7 410 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 CDK20Q8IZL9 346 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 ZCCHC24Q8N2G6 241 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 GPR32P1Q8NGA4 272 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 RP9Q8TA86 221 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 PPP1R35Q8TAP8 253 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SLC26A7Q8TE54 656 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 ADAMTS16Q8TE57 1224 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 TMEM54Q969K7 222 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 RPL36ALQ969Q0 106 aaKnown RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 ZNF566Q969W8 418 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SLC25A44Q96H78 314 aaPredicted RBP6.21□□□□□ -1.42
USP54-208ENST00000461520 LRGUKQ96M69 825 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 SIKE1Q9BRV8 207 aa6.21□□□□□ -1.42
USP54-208ENST00000461520 ZNF426Q9BUY5 554 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms