RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 TRIM15Q9C019 465 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 LRMDAQ9H2I8 198 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 PPA2Q9H2U2 334 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 C12orf10Q9HB07 376 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 SMURF1Q9HCE7 757 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 PSMC3IPQ9P2W1 217 aaPredicted RBP6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 CLN8Q9UBY8 286 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 IL19Q9UHD0 177 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 BTNL2Q9UIR0 455 aa6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 RRP15Q9Y3B9 282 aaKnown RBP6.97□□□□□ -1.29
HMGB1P39-201ENST00000366304 ERICH4A6NGS2 130 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ENSAO43768 121 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 TPST1O60507 370 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 EIF4EBP3O60516 100 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 FARS2O95363 451 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 SLC2A10O95528 541 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 PTHP01270 115 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 SHBGP04278 402 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ADORA3P0DMS8 318 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 CD28P10747 220 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 TNFRSF1AP19438 455 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 KITLGP21583 273 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 GABRA5P31644 462 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 MSX2P35548 267 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 TGFBR2P37173 567 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 PSMB10P40306 273 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 GDI2P50395 445 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 NME5P56597 212 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ERVK-25P63136 954 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 CKAP4Q07065 602 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 CD69Q07108 199 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 GTDC1Q4AE62 458 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 TTMPQ5BVD1 217 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ALG10BQ5I7T1 473 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ZNF621Q6ZSS3 439 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 DPPA2Q7Z7J5 298 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 MOGAT3Q86VF5 341 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ZDHHC13Q8IUH4 622 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 C4orf33Q8N1A6 199 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 FGFRL1Q8N441 504 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 PNKDQ8N490 385 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 HIPK4Q8NE63 616 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 MAL2Q969L2 176 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 VPS33AQ96AX1 596 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 NMD3Q96D46 503 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 CMBLQ96DG6 245 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 PLEKHA8Q96JA3 519 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 SEPHS2Q99611 448 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 B9D2Q9BPU9 175 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ASPNQ9BXN1 380 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 MRPL13Q9BYD1 178 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 A4GALTQ9NPC4 353 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 ZNRD1Q9P1U0 126 aa6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 EIF3KQ9UBQ5 218 aaKnown RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 CGGBP1Q9UFW8 167 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P39-201ENST00000366304 A0A0B4J2E0 115 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 A0A1B0GX12 115 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 E9PBE3 544 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 RNASEK-C17orf49H0YIS7 233 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 H3BSA7 217 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 PHYHO14832 338 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 MLNRO43193 412 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 LYPD3O95274 346 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 OPN1SWP03999 348 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 SCG5P05408 212 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 FAM153BP0C7A2 387 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 CPT2P23786 658 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 S100A3P33764 101 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 RPL4P36578 427 aaKnown RBP6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 ZNF133P52736 654 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 CDH12P55289 794 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 UFM1P61960 85 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 ARF6P62330 175 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 FMODQ06828 376 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 WHAMMP3Q1A5X7 153 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 NRN1LQ496H8 165 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 ZMAT1Q5H9K5 638 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 CDPF1Q6NVV7 123 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 PGBD2Q6P3X8 592 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 C5orf46Q6UWT4 87 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR5AS1Q8N127 324 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 GALNT4Q8N4A0 578 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 C10orf53Q8N6V4 93 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 WFDC9Q8NEX5 89 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR5J2Q8NH18 312 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 FBLIM1Q8WUP2 373 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 R3HDM4Q96D70 268 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 C4orf45Q96LM5 186 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 PANX1Q96RD7 426 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 TXLNGYQ9BZA5 131 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 SLC19A3Q9BZV2 496 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR2H1Q9GZK4 316 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 DPAGT1Q9H3H5 408 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 SIAEQ9HAT2 523 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 P2RX2Q9UBL9 471 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 RPS6KB2Q9UBS0 482 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 TMCC3Q9ULS5 477 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 STARD10Q9Y365 291 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 PCDHGB5Q9Y5G0 923 aa6.95□□□□□ -1.3
HMGB1P39-201ENST00000366304 A0A0G2JPF8 293 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms