RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 PGGHGQ32M88 737 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 RPL7L1Q6DKI1 246 aaKnown RBP8.34□□□□□ -1.07
PDGFC-201ENST00000274071 AWAT2Q6E213 333 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 ZNF836Q6ZNA1 936 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 MRPL52Q86TS9 123 aaKnown RBP8.34□□□□□ -1.07
PDGFC-201ENST00000274071 RAB8BQ92930 207 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 NUDT11Q96G61 164 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 SLC25A21Q9BQT8 299 aaPredicted RBP8.34□□□□□ -1.07
PDGFC-201ENST00000274071 POTEKPQ9BYX7 375 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 NELFAQ9H3P2 528 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 HAO2Q9NYQ3 351 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 LRFN1Q9P244 771 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 PCDHB8Q9UN66 801 aa8.34□□□□□ -1.07
PDGFC-201ENST00000274071 J3QW42 95 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 CD22P20273 847 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 THPOP40225 353 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 PPICP45877 212 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 KLF3P57682 345 aaPredicted RBP8.34□□□□□ -1.08
PDGFC-201ENST00000274071 SNRPNP63162 240 aaKnown RBP8.34□□□□□ -1.08
PDGFC-201ENST00000274071 MIDNQ504T8 468 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 ZNF311Q5JNZ3 666 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 FAHD2BQ6P2I3 314 aaPredicted RBP8.34□□□□□ -1.08
PDGFC-201ENST00000274071 LHFPL4Q7Z7J7 247 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 C17orf64Q86WR6 236 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 KMT5CQ86Y97 462 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 SMARCD2Q92925 531 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 KISS1RQ969F8 398 aaPredicted RBP8.34□□□□□ -1.08
PDGFC-201ENST00000274071 FAHD2AQ96GK7 314 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 LMF1Q96S06 567 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 PDCD1LG2Q9BQ51 273 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 ASB8Q9H765 288 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 CSNK1G1Q9HCP0 422 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 Q9N2J8 555 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.34□□□□□ -1.08
PDGFC-201ENST00000274071 TIMM13Q9Y5L4 95 aaPredicted RBP8.34□□□□□ -1.08
PDGFC-201ENST00000274071 V9GY05 133 aa8.34□□□□□ -1.08
PDGFC-201ENST00000274071 KIR2DL5BA0A0G2JN68 375 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 KIR2DL5BA0A0G2JPC4 375 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 C13orf42A0A1B0GVH6 325 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 IRAK2O43187 625 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 GBAP04062 536 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 OR5AC1P0C628 307 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 TNFSF10P50591 281 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 BATFQ16520 125 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 PRSS53Q2L4Q9 553 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 PRAMEF14Q5SWL7 426 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 OR8G2PQ6IF36 304 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 CHST9Q7L1S5 443 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 NUFIP2Q7Z417 695 aaKnown RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 KIR2DL5AQ8N109 375 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 C12orf76Q8N812 135 aaPredicted RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 ZNF615Q8N8J6 731 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 HAS2Q92819 552 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 HLA-CQ95604 372 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 RCC1LQ96I51 464 aaKnown RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 TTTY10Q9BZA0 68 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 PCED1AQ9H1Q7 454 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 PADI3Q9ULW8 664 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 PRSS21Q9Y6M0 314 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 HHLA1C9JL84 531 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 ZBTB25P24278 435 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 CD52P31358 61 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 TAGLN2P37802 199 aaKnown RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 UCP2P55851 309 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 TAS2R19P59542 299 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 ATP6V1FQ16864 119 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 AADACL3Q5VUY0 350 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 MTSS1LQ765P7 747 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 LRRC70Q7Z2Q7 622 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 BHLHE23Q8NDY6 225 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 METTL21AQ8WXB1 218 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 TNFRSF14Q92956 283 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 SMIM19Q96E16 107 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 SEPT5Q99719 369 aaPredicted RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 PAAF1Q9BRP4 392 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 OR8D2Q9GZM6 311 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 CAPN10Q9HC96 672 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 USP36Q9P275 1121 aaKnown RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 OR52A1Q9UKL2 312 aa8.33□□□□□ -1.08
PDGFC-201ENST00000274071 ZNF106Q9H2Y7 1883 aaKnown RBP8.33□□□□□ -1.08
PDGFC-201ENST00000274071 C5orf51A6NDU8 294 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 CASTOR2A6NHX0 329 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 ZNF354AO60765 605 aaPredicted RBP8.32□□□□□ -1.08
PDGFC-201ENST00000274071 OR2J2O76002 312 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 OR5H8P0DN80 308 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 CALCBP10092 127 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 FGF5P12034 268 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 WNT5AP41221 380 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 RAB7AP51149 207 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 SLC16A1P53985 500 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 PPP1R1AQ13522 171 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 EBPQ15125 230 aaKnown RBP8.32□□□□□ -1.08
PDGFC-201ENST00000274071 IQCJQ1A5X6 159 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 SOHLH1Q5JUK2 328 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 SLC24A5Q71RS6 500 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 HMGN2P46Q86SG4 172 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 LSRQ86X29 649 aaPredicted RBP8.32□□□□□ -1.08
PDGFC-201ENST00000274071 SCN4BQ8IWT1 228 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 GABRG1Q8N1C3 465 aa8.32□□□□□ -1.08
PDGFC-201ENST00000274071 ARL14Q8N4G2 192 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms