RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 IKZF2Q9UKS7 526 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 PIEZO2Q9H5I5 2752 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 INMTO95050 263 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 LCKP06239 509 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 CD8BP10966 210 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ARF1P84077 181 aaKnown RBP13.42□□□□□ -0.26
TRIM28-209ENST00000597423 BDH1Q02338 343 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ROM1Q03395 351 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ACSM1Q08AH1 577 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 MLLT11Q13015 90 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-209ENST00000597423 AQP6Q13520 282 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 TAF13Q15543 124 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ARMCX4Q5H9R4 360 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ANKRD16Q6P6B7 361 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 TFAP2EQ6VUC0 442 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 Q6ZT83 130 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 BEND4Q6ZU67 534 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 SEM1Q6ZVN7 128 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF627Q7L945 461 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.42□□□□□ -0.26
TRIM28-209ENST00000597423 DCXRQ7Z4W1 244 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 CCDC36Q8IYA8 594 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF679Q8IYX0 411 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 SLC22A24Q8N4F4 322 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 OR52N5Q8NH56 324 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 SMAP2Q8WU79 429 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF649Q9BS31 505 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ABHD6Q9BV23 337 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 EMC7Q9NPA0 242 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 PRSS50Q9UI38 385 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 GNG8Q9UK08 70 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 TIMM10BQ9Y5J6 103 aa13.42□□□□□ -0.26
TRIM28-209ENST00000597423 ACACBO00763 2458 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 LAMA5O15230 3695 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 TRGV8A0A0C4DH27 118 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 SMIM31A0A1B0GVY4 71 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 SEC14L2O76054 403 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 SCG5P05408 212 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 ADRA2AP08913 450 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 HOXB1P14653 301 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-209ENST00000597423 SCRN3Q0VDG4 424 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 GPR50Q13585 617 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 RAB39AQ14964 217 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 P2RY6Q15077 328 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 SLC36A2Q495M3 483 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 CCDC58Q4VC31 144 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 OR2G6Q5TZ20 316 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 C3P1Q6ZMU1 363 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 LINGO2Q7L985 606 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 SLC16A14Q7RTX9 510 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 BTLAQ7Z6A9 289 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 YIPF7Q8N8F6 280 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 RND1Q92730 232 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 UFD1Q92890 307 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 NABP1Q96AH0 204 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 STARD4Q96DR4 205 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF837Q96EG3 531 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-209ENST00000597423 C4orf36Q96KX1 117 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 OR5M11Q96RB7 305 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 OR8B4Q96RC9 309 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF416Q9BWM5 594 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 NIPAL2Q9H841 368 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 CENPMQ9NSP4 180 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 GALNT8Q9NY28 637 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 ASH2LQ9UBL3 628 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF629Q9UEG4 869 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-209ENST00000597423 TINAGQ9UJW2 476 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 GDF2Q9UK05 429 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-209ENST00000597423 COPS3Q9UNS2 423 aa13.41□□□□□ -0.26
TRIM28-209ENST00000597423 LSM2Q9Y333 95 aaKnown RBP13.41□□□□□ -0.26
TRIM28-209ENST00000597423 CIB4A0PJX0 185 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 NOL3O60936 208 aaKnown RBP13.4□□□□□ -0.26
TRIM28-209ENST00000597423 TNFSF13O75888 250 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 TOXO94900 526 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 APOC1P02654 83 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 H2BFMP0C1H6 154 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 ARR3P36575 388 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 CA7P43166 264 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 RIDAP52758 137 aaKnown RBP13.4□□□□□ -0.26
TRIM28-209ENST00000597423 OR12D2P58182 307 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 FOXF2Q12947 444 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 ECH1Q13011 328 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 TP53I3Q53FA7 332 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 OR7E24Q6IFN5 339 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 KLHL24Q6TFL4 600 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 VASH1Q7L8A9 365 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-209ENST00000597423 KLBQ86Z14 1044 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 LINC00346Q8IVM7 164 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 ALDH16A1Q8IZ83 802 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 LRRC18Q8N456 261 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 OR13F1Q8NGS4 319 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 NANOS1Q8WY41 292 aaKnown RBP13.4□□□□□ -0.26
TRIM28-209ENST00000597423 FAM192AQ9GZU8 254 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 ISG20L2Q9H9L3 353 aaKnown RBP13.4□□□□□ -0.26
TRIM28-209ENST00000597423 ELOVL3Q9HB03 270 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 LHFPL6Q9Y693 200 aa13.4□□□□□ -0.26
TRIM28-209ENST00000597423 ALPK2Q86TB3 2170 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 DPPA5A6NC42 116 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 CCRL2O00421 344 aa13.39□□□□□ -0.27
TRIM28-209ENST00000597423 DVL2O14641 736 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms