RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 POM121CA8CG34 1229 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 OR5F1O95221 314 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 PPIAL4GP0DN37 164 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 COX5BP10606 129 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 CPT2P23786 658 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 GDI2P50395 445 aaKnown RBP13.85□□□□□ -0.19
CLN3-208ENST00000561505 PAX2Q02962 417 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 FMODQ06828 376 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 ZNF154Q13106 437 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 VMACQ2NL98 169 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 ZMAT1Q5H9K5 638 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 SPATA46Q5T0L3 261 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 C9orf139Q6ZV77 190 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 ICA1LQ8NDH6 482 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 AKR7LQ8NHP1 331 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 PFN4Q8NHR9 129 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 ST7LQ8TDW4 575 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 TMEM255BQ8WV15 326 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 C22orf15Q8WYQ4 148 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 SGTBQ96EQ0 304 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 SAMD8Q96LT4 415 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 ZNF48Q96MX3 618 aaPredicted RBP13.85□□□□□ -0.19
CLN3-208ENST00000561505 SIGLEC11Q96RL6 698 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 WACQ9BTA9 647 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 DCAF16Q9NXF7 216 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 ZNF69Q9UC07 566 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 PPIAL4AQ9Y536 164 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 TIMM10BQ9Y5J6 103 aa13.85□□□□□ -0.19
CLN3-208ENST00000561505 MCIDASD6RGH6 385 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 RNASE1P07998 156 aaKnown RBP13.84□□□□□ -0.19
CLN3-208ENST00000561505 VIMP08670 466 aaKnown RBP13.84□□□□□ -0.19
CLN3-208ENST00000561505 CCNOP22674 350 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 PAX8Q06710 450 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 PSG7Q13046 419 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 FHL1Q13642 323 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 LAPTM4AQ15012 233 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 MTX3Q5HYI7 312 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 AGBL2Q5U5Z8 902 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 ZER1Q7Z7L7 766 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 CALHM3Q86XJ0 350 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 ALDH16A1Q8IZ83 802 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 LRRC75AQ8NAA5 344 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 TMEM239Q8WW34 195 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 DACT3Q96B18 629 aaPredicted RBP13.84□□□□□ -0.19
CLN3-208ENST00000561505 C4orf45Q96LM5 186 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 SLITRK2Q9H156 845 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 ELOVL3Q9HB03 270 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 TMEM106BQ9NUM4 274 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 TBCCD1Q9NVR7 557 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 RIMS3Q9UJD0 308 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 AUP1Q9Y679 476 aa13.84□□□□□ -0.19
CLN3-208ENST00000561505 DNAJC9-AS1A6NH13 148 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 FSTL3O95633 263 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 KITLGP21583 273 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 LAP3P28838 519 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 PCBD1P61457 104 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 ERVK-25P63136 954 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 ENDOGQ14249 297 aaKnown RBP13.83□□□□□ -0.2
CLN3-208ENST00000561505 SGCAQ16586 387 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 BEND6Q5SZJ8 279 aaPredicted RBP13.83□□□□□ -0.2
CLN3-208ENST00000561505 Q6ZR03 302 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 SPICQ8N5J4 248 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 OR10A6Q8NH74 314 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 LRRC8CQ8TDW0 803 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 GEMIN6Q8WXD5 167 aaKnown RBP13.83□□□□□ -0.2
CLN3-208ENST00000561505 PRDM13Q9H4Q3 707 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 MSL2Q9HCI7 577 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 EGFL7Q9UHF1 273 aa13.83□□□□□ -0.2
CLN3-208ENST00000561505 VWFP04275 2813 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 RPL27P61353 136 aaKnown RBP13.82□□□□□ -0.2
CLN3-208ENST00000561505 TNFAIP6P98066 277 aaPredicted RBP13.82□□□□□ -0.2
CLN3-208ENST00000561505 PIN1Q13526 163 aaPredicted RBP13.82□□□□□ -0.2
CLN3-208ENST00000561505 NANOGP8Q6NSW7 305 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 RBMS3Q6XE24 437 aaKnown RBP13.82□□□□□ -0.2
CLN3-208ENST00000561505 BCL6BQ8N143 479 aaPredicted RBP13.82□□□□□ -0.2
CLN3-208ENST00000561505 FAM156AQ8NDB6 213 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 ABHD4Q8TB40 342 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 SLC26A7Q8TE54 656 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 RBP7Q96R05 134 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 MAN2C1Q9NTJ4 1040 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 UBAP1Q9NZ09 502 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 IL19Q9UHD0 177 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 BAG5Q9UL15 447 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 SH3GLB1Q9Y371 365 aa13.82□□□□□ -0.2
CLN3-208ENST00000561505 ISPDA4D126 451 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 ANGPT2O15123 496 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 WNT2P09544 360 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 SBK2P0C263 348 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 TNFRSF1AP19438 455 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 SEC61A1P61619 476 aaKnown RBP13.81□□□□□ -0.2
CLN3-208ENST00000561505 IL13RA1P78552 427 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 ZMYND11Q15326 602 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 ANKDD1AQ495B1 522 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 PDLIM3Q53GG5 364 aaPredicted RBP13.81□□□□□ -0.2
CLN3-208ENST00000561505 ALG10Q5BKT4 473 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 FAM205BPQ63HN1 556 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 ZNF774Q6NX45 483 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 ARL9Q6T311 187 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 KLHL36Q8N4N3 616 aa13.81□□□□□ -0.2
CLN3-208ENST00000561505 NPEPL1Q8NDH3 523 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms