RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RASSF1Q9NS23 344 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 NDRG4Q9ULP0 352 aaKnown RBP18.93■□□□□ 0.62
SNX1-210ENST00000560260 LHFPL6Q9Y693 200 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 COMMD3-BMI1R4GMX3 469 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 CENPEQ02224 2701 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 CADP27708 2225 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 CCDC182A6NF36 153 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 TLX2O43763 284 aaPredicted RBP18.92■□□□□ 0.62
SNX1-210ENST00000560260 RAB36O95755 333 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 ARR3P36575 388 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 GUCA1AP43080 201 aaPredicted RBP18.92■□□□□ 0.62
SNX1-210ENST00000560260 LSM6P62312 80 aaKnown RBP18.92■□□□□ 0.62
SNX1-210ENST00000560260 PSG4Q00888 419 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 AADACL4Q5VUY2 407 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 B3GLCTQ6Y288 498 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 DPPA2Q7Z7J5 298 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 OR6K6Q8NGW6 343 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 AKR7LQ8NHP1 331 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 RDH12Q96NR8 316 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 WNT5BQ9H1J7 359 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 RNF121Q9H920 327 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 WDR76Q9H967 626 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 NGBQ9NPG2 151 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 C8orf4Q9NR00 106 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 FAM118AQ9NWS6 357 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 ASH2LQ9UBL3 628 aa18.92■□□□□ 0.62
SNX1-210ENST00000560260 ABCA4P78363 2273 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 GLCEO94923 617 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 GOSR1O95249 250 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 HLA-DQA2P01906 255 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 CALCRP30988 508 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 RPS27P42677 84 aaKnown RBP18.91■□□□□ 0.62
SNX1-210ENST00000560260 KRTAP10-9P60411 292 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 C3orf36Q3SXR2 165 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 KLHL12Q53G59 568 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 PABPC1L2AQ5JQF8 200 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 ADAM5Q6NVV9 412 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 TMEM53Q6P2H8 277 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 CORO6Q6QEF8 472 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 TMEM108Q6UXF1 575 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 LINC00346Q8IVM7 164 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 KBTBD8Q8NFY9 601 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 NEUROG1Q92886 237 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 ZMYND19Q96E35 227 aaPredicted RBP18.91■□□□□ 0.62
SNX1-210ENST00000560260 OR2H1Q9GZK4 316 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 ESRP2Q9H6T0 727 aaKnown RBP18.91■□□□□ 0.62
SNX1-210ENST00000560260 CCNB1IP1Q9NPC3 277 aa18.91■□□□□ 0.62
SNX1-210ENST00000560260 C12orf71A8MTZ7 269 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 ABCD4O14678 606 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 PTAFRP25105 342 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 SSTR2P30874 369 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 NR1H2P55055 460 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 NAAAQ02083 359 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 APOFQ13790 326 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 CPEB3Q8NE35 698 aaKnown RBP18.9■□□□□ 0.62
SNX1-210ENST00000560260 MARCH7Q9H992 704 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 AASSQ9UDR5 926 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 GMPPBQ9Y5P6 360 aa18.9■□□□□ 0.62
SNX1-210ENST00000560260 LOC100130705A0A1B0GUX0 176 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 SHISA9B4DS77 424 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 ATP6V1G2-DDX39BF2Z307 99 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 SLC16A6O15403 523 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 PRODHO43272 600 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 CD3EP07766 207 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 PAX7P23759 505 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 FMO3P31513 532 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 CDC42P60953 191 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 HIST1H3AP68431 136 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 AQP6Q13520 282 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 HIST2H3PS2Q5TEC6 136 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 SLC18B1Q6NT16 456 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 ZNF774Q6NX45 483 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 ZNF704Q6ZNC4 412 aaPredicted RBP18.89■□□□□ 0.61
SNX1-210ENST00000560260 HIST2H3AQ71DI3 136 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 SYT9Q86SS6 491 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 TMEM200AQ86VY9 491 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 TIGD4Q8IY51 512 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 OR10H5Q8NGA6 315 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 LILRB1Q8NHL6 650 aaPredicted RBP18.89■□□□□ 0.61
SNX1-210ENST00000560260 KCNN2Q9H2S1 579 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 CLEC4MQ9H2X3 399 aaPredicted RBP18.89■□□□□ 0.61
SNX1-210ENST00000560260 MOV10Q9HCE1 1003 aaKnown RBP18.89■□□□□ 0.61
SNX1-210ENST00000560260 MOKQ9UQ07 419 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 POLR1DQ9Y2S0 133 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 RNF115Q9Y4L5 304 aa18.89■□□□□ 0.61
SNX1-210ENST00000560260 FLNBO75369 2602 aaKnown RBP18.89■□□□□ 0.61
SNX1-210ENST00000560260 IGHV2OR16-5A0A0B4J2B6 119 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 SELENOFO60613 162 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 CLIC3O95833 236 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 SERPINA5P05154 406 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 APEX1P27695 318 aaKnown RBP18.88■□□□□ 0.61
SNX1-210ENST00000560260 GSTT1P30711 240 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 ADAM8P78325 824 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 CCDC92Q53HC0 331 aaPredicted RBP18.88■□□□□ 0.61
SNX1-210ENST00000560260 SLC35D3Q5M8T2 416 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 NXNL2Q5VZ03 156 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 CFAP77Q6ZQR2 320 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 CDC20BQ86Y33 519 aa18.88■□□□□ 0.61
SNX1-210ENST00000560260 PIAS4Q8N2W9 510 aaPredicted RBP18.88■□□□□ 0.61
SNX1-210ENST00000560260 PAQR4Q8N4S7 273 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms