RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NKX3-1Q99801 234 aaPredicted RBP3.94□□□□□ -1.78
LIMS1-214ENST00000542845 CHID1Q9BWS9 393 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 C1QTNF3Q9BXJ4 246 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 SLC19A3Q9BZV2 496 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 OR2J1Q9GZK6 312 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 WDR12Q9GZL7 423 aaKnown RBP3.94□□□□□ -1.78
LIMS1-214ENST00000542845 MYLK2Q9H1R3 596 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 PNPOQ9NVS9 261 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 C1orf109Q9NX04 203 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 EIF3KQ9UBQ5 218 aaKnown RBP3.94□□□□□ -1.78
LIMS1-214ENST00000542845 CLN8Q9UBY8 286 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 ATP6V1HQ9UI12 483 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 RPUSD1Q9UJJ7 312 aaKnown RBP3.94□□□□□ -1.78
LIMS1-214ENST00000542845 FBXL3Q9UKT7 428 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 ZDHHC8Q9ULC8 765 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 STK38LQ9Y2H1 464 aa3.94□□□□□ -1.78
LIMS1-214ENST00000542845 C5orf49A4QMS7 147 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF879B4DU55 563 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM178BH3BS89 294 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 SLC28A1O00337 649 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 EIF3HO15372 352 aaKnown RBP eCLIP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 TBX19O60806 448 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 FARS2O95363 451 aaKnown RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CPSF4O95639 269 aaKnown RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 AK1P00568 194 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 PTHP01270 115 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CHRM2P08172 466 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CCDC159P0C7I6 412 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 LINC00032P0C843 101 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 SLC6A2P23975 617 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CRHR1P34998 444 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CFHR2P36980 270 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CRATP43155 626 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 EFNB2P52799 333 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 PLTPP55058 493 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 HPCAP84074 193 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 HSF2Q03933 536 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 EPS8Q12929 822 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 NAB1Q13506 487 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 KRT72Q14CN4 511 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 KIAA0040Q15053 153 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 GSTA3Q16772 222 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 RFTN2Q52LD8 501 aaPredicted RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 XKR7Q5GH72 579 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM255AQ5JRV8 349 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 KHDC1LQ5JSQ8 128 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 FAM201AQ5SY85 155 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 METTL11BQ5VVY1 283 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF774Q6NX45 483 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 SLC16A14Q7RTX9 510 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 LDLRAD3Q86YD5 345 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF101Q8IZC7 436 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 SLC35F6Q8N357 371 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 SLC22A24Q8N4F4 322 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF283Q8N7M2 679 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 DTX3Q8N9I9 347 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 RBM15BQ8NDT2 890 aaKnown RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 C19orf18Q8NEA5 215 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 FAM71CQ8NEG0 241 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 OR4C13Q8NGP0 309 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 KLF14Q8TD94 323 aaPredicted RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 MUL1Q969V5 352 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 MOAP1Q96BY2 351 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 MTERF3Q96E29 417 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 KIRREL1Q96J84 757 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 SAMD8Q96LT4 415 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 WDFY2Q96P53 400 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 OR5M11Q96RB7 305 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CCT7Q99832 543 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CITED2Q99967 270 aaPredicted RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM246Q9BRR3 403 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF350Q9GZX5 532 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 EXOSC3Q9NQT5 275 aaKnown RBP3.93□□□□□ -1.78
LIMS1-214ENST00000542845 CYSLTR2Q9NS75 346 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM140Q9NV12 185 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 C19orf73Q9NVV2 129 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 RLIMQ9NVW2 624 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM216Q9P0N5 145 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 GIMAP2Q9UG22 337 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 VPREB3Q9UKI3 123 aa3.93□□□□□ -1.78
LIMS1-214ENST00000542845 RNF103-CHMP3A0A140T963 221 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 NPIPB8E9PQR5 432 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 C11orf98E9PRG8 122 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 MS4A18H0YCH9 400 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 RNASEK-C17orf49H0YIS7 233 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 H3BUX3 64 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 AIM2O14862 343 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 ENSAO43768 121 aaKnown RBP3.92□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM127O75204 238 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 LY86O95711 162 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 PAHP00439 452 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 HPRP00739 348 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 FBP1P09467 338 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 AHCYP23526 432 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 ATP5F1P24539 256 aaPredicted RBP3.92□□□□□ -1.78
LIMS1-214ENST00000542845 STOMP27105 288 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 GRPRP30550 384 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 LIPAP38571 399 aa3.92□□□□□ -1.78
LIMS1-214ENST00000542845 ANP32AP39687 249 aaKnown RBP3.92□□□□□ -1.78
LIMS1-214ENST00000542845 ACAA2P42765 397 aaKnown RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms