RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	SIT1	Q9Y3P8	196 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	ASCC3	Q8N3C0	2202 aa	Known RBP	11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TMEM272	A0A1B0GTI8	110 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TRIM77	I1YAP6	450 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	APEH	P13798	732 aa	Known RBP	11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PPP3CB	P16298	524 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	CCKBR	P32239	447 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	BAMBI	Q13145	260 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	SHB	Q15464	509 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	C4orf46	Q504U0	113 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	WDR38	Q5JTN6	314 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	GUSBP11	Q6P575	273 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	C11orf88	Q6PI97	169 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	GSG1L	Q6UXU4	331 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PM20D2	Q8IYS1	436 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	OR6N1	Q8NGY5	312 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	DNASE2B	Q8WZ79	361 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	DAZL	Q92904	295 aa	Known RBP	11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	MCHR2	Q969V1	340 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PMEPA1	Q969W9	287 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	ZNF501	Q96CX3	271 aa	Predicted RBP	11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC41A2	Q96JW4	573 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	WWTR1	Q9GZV5	400 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PCED1A	Q9H1Q7	454 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TAS2R8	Q9NYW2	309 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PFDN2	Q9UHV9	154 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	GTF2A1L	Q9UNN4	478 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC6A5	Q9Y345	797 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TIAF1	O95411	115 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	CXCR1	P25024	350 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	ABCD3	P28288	659 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	GALNS	P34059	522 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	ARRB1	P49407	418 aa	Predicted RBP	11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	RIPPLY1	Q0D2K3	151 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	GK2	Q14410	553 aa	Predicted RBP	11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	C2orf76	Q3KRA6	126 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	FAM69B	Q5VUD6	431 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	B3GNTL1	Q67FW5	361 aa	Predicted RBP	11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC35D2	Q76EJ3	337 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC29A4	Q7RTT9	530 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	LIPH	Q8WWY8	451 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	PPP1R14A	Q96A00	147 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	INTS14	Q96SY0	518 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	GAL3ST1	Q99999	423 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	MED11	Q9P086	117 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	MRTO4	Q9UKD2	239 aa	Known RBP	11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	BET1	O15155	118 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	ZNF432	O94892	652 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	TXNDC12	O95881	172 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	AKAIN1	P0CW23	69 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	SORD	Q00796	357 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	EGR3	Q06889	387 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	STPG2	Q8N412	459 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	PLPP7	Q8NBV4	271 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	OR2I1P	Q8NGU4	316 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	LHFPL5	Q8TAF8	219 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	STK35	Q8TDR2	534 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	MVB12A	Q96EY5	273 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	C4orf45	Q96LM5	186 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	DCBLD2	Q96PD2	775 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	PRO3102	Q9H379	93 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	EXO5	Q9H790	373 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC22A11	Q9NSA0	550 aa		11.26	□□□□□ -0.61
RNF4-222	ENST00000541204	SNAPC5	O75971	98 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	SPDEF	O95238	335 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	REN	P00797	406 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	HLA-DQA2	P01906	255 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	PRSS3	P35030	304 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	CENPA	P49450	140 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	RASGEF1B	Q0VAM2	473 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	EEF1A1P5	Q5VTE0	462 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	STT3B	Q8TCJ2	826 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	DUSP19	Q8WTR2	217 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	ST8SIA4	Q92187	359 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	FAM3D	Q96BQ1	224 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	OR6C1	Q96RD1	312 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	CDX2	Q99626	313 aa	Predicted RBP	11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	CHRNA10	Q9GZZ6	450 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	SHARPIN	Q9H0F6	387 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	ATG5	Q9H1Y0	275 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	APMAP	Q9HDC9	416 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	C12orf4	Q9NQ89	552 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	EXOSC3	Q9NQT5	275 aa	Known RBP	11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	MED9	Q9NWA0	146 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC22A13	Q9Y226	551 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC22A23	A1A5C7	686 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204		A8MXK9	166 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	TPPP	O94811	219 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	IGF2	P01344	180 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	SCAND1	P57086	179 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	MEP1B	Q16820	701 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	ZNF660	Q6AZW8	331 aa	Predicted RBP	11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	NAXD	Q8IW45	347 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	OR1N1	Q8NGS0	311 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	OR1S1	Q8NH92	325 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	OR11A1	Q9GZK7	315 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	POFUT1	Q9H488	388 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	ELOVL3	Q9HB03	270 aa		11.25	□□□□□ -0.61
RNF4-222	ENST00000541204	COLQ	Q9Y215	455 aa	Predicted RBP	11.25	□□□□□ -0.61

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