RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	RGN	Q15493	299 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	NRN1L	Q496H8	165 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	FAM98B	Q52LJ0	330 aa	Known RBP	10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	ZMAT1	Q5H9K5	638 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	COX20	Q5RI15	118 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	TMEM53	Q6P2H8	277 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	C16orf87	Q6PH81	154 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	SPATC1	Q76KD6	591 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	SLC30A8	Q8IWU4	369 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	CLIP4	Q8N3C7	705 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	SLC22A24	Q8N4F4	322 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	SPIC	Q8N5J4	248 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	PACRGL	Q8N7B6	248 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	OR4F5	Q8NH21	305 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	DNAJA4	Q8WW22	397 aa	Predicted RBP	10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	CCL17	Q92583	94 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	CENPN	Q96H22	339 aa	Predicted RBP	10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	DIRC2	Q96SL1	478 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	EPYC	Q99645	322 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	CITED1	Q99966	193 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	EMC6	Q9BV81	110 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	ASPN	Q9BXN1	380 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	EGLN1	Q9GZT9	426 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	BEX1	Q9HBH7	125 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	CYSLTR2	Q9NS75	346 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	UBAP1	Q9NZ09	502 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	INSIG2	Q9Y5U4	225 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	CACNG2	Q9Y698	323 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	TANC2	Q9HCD6	1990 aa		10.52	□□□□□ -0.73
CAPN1-223	ENST00000533079	PLSCR5	A0PG75	271 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	MS4A18	H0YCH9	400 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	HPR	P00739	348 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	C1QC	P02747	245 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	ADH4	P08319	380 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	HLA-DOB	P13765	273 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	NCK1	P16333	377 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	LIPA	P38571	399 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	ERF	P50548	548 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	UCP2	P55851	309 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	ATP6AP1	Q15904	470 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	TST	Q16762	297 aa	Known RBP	10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	MS4A18	Q3C1V0	323 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	SLC36A2	Q495M3	483 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	FAM205BP	Q63HN1	556 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	BRICD5	Q6PL45	260 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	UNQ6126/PRO20091	Q6UXV3	157 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	PXK	Q7Z7A4	578 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	PTOV1	Q86YD1	416 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	SKA3	Q8IX90	412 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	C1orf174	Q8IYL3	243 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	KLHL36	Q8N4N3	616 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	LRTOMT	Q8WZ04	291 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	CHID1	Q9BWS9	393 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	RSPO3	Q9BXY4	272 aa	Predicted RBP	10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	A4GALT	Q9NPC4	353 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	MRPL39	Q9NYK5	338 aa	Known RBP	10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	LRCH1	Q9Y2L9	728 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	CHST2	Q9Y4C5	530 aa		10.51	□□□□□ -0.73
CAPN1-223	ENST00000533079	IGKV1D-42	A0A075B6H8	117 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	IQCM	A0A1B0GVH7	501 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079		H3BSA7	217 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	IGHV1-46	P01743	117 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	IGHV2-70	P01814	119 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	ZNF26	P17031	533 aa	Predicted RBP	10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	MAK	P20794	623 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	KDELR2	P33947	212 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	HSPA13	P48723	471 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	MMP15	P51511	669 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	DSTN	P60981	165 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	ERVS71-1	P61550	626 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	TAF11	Q15544	211 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	TMEM155	Q4W5P6	130 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	FBLN7	Q53RD9	439 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	ALG10B	Q5I7T1	473 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	INTS11	Q5TA45	600 aa	Known RBP	10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	CCDC80	Q76M96	950 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	BCL6B	Q8N143	479 aa	Predicted RBP	10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	C10orf111	Q8N326	155 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	PARP8	Q8N3A8	854 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	PAQR4	Q8N4S7	273 aa	Predicted RBP	10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	C11orf65	Q8NCR3	313 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	SLC38A5	Q8WUX1	472 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	UBE2F	Q969M7	185 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	PYURF	Q96I23	114 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	VCX	Q9H320	206 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	TMEM38B	Q9NVV0	291 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	PDP1	Q9P0J1	537 aa	Predicted RBP	10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	IL20RA	Q9UHF4	553 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	RPS6KA6	Q9UK32	745 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	ZDHHC8	Q9ULC8	765 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	SAMD4A	Q9UPU9	718 aa	Known RBP	10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	NPTN	Q9Y639	398 aa		10.5	□□□□□ -0.73
CAPN1-223	ENST00000533079	NOTCH1	P46531	2555 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	ALX3	O95076	343 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	NDUFA7	O95182	113 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	PLAT	P00750	562 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	CD55	P08174	381 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	ETFA	P13804	333 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	CPT2	P23786	658 aa		10.49	□□□□□ -0.73
CAPN1-223	ENST00000533079	PEX2	P28328	305 aa		10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms