RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ZNF432O94892 652 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 ZNF682O95780 498 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NPPAP01160 153 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 CD8AP01732 235 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 BGLAPP02818 100 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SOD3P08294 240 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 CD99P14209 185 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NQO1P15559 274 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 NCK1P16333 377 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 ZNF43P17038 809 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 FUT1P19526 365 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 COX5AP20674 150 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 AHCYP23526 432 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 GTF2E2P29084 291 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 KDELR2P33947 212 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SLC7A2P52569 658 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NR1H2P55055 460 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NCALDP61601 193 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 ROR2Q01974 943 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 SPOCK1Q08629 439 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 CAMK2DQ13557 499 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 MAPRE2Q15555 327 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 TIGD6Q17RP2 521 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 LRRC23Q53EV4 343 aaPredicted RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 TIMM23BQ5SRD1 257 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 PHYHD1Q5SRE7 291 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NCMAPQ5T1S8 102 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 INTS11Q5TA45 600 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 FAM91A1Q658Y4 838 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 C6orf89Q6UWU4 347 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NHLRC1Q6VVB1 395 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SPNS3Q6ZMD2 512 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 CCDC80Q76M96 950 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 VTCN1Q7Z7D3 282 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 PATL1Q86TB9 770 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 RANBP3LQ86VV4 465 aaPredicted RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 TGIF2LYQ8IUE0 185 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 NKAIN4Q8IVV8 208 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 MICU2Q8IYU8 434 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 CIARTQ8N365 385 aaPredicted RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 RNF148Q8N7C7 305 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 RNF152Q8N8N0 203 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 KBTBD8Q8NFY9 601 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 OR2T12Q8NG77 320 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 OR8J3Q8NGG0 315 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 ADAMTS16Q8TE57 1224 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SMAP2Q8WU79 429 aaPredicted RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 HTRA1Q92743 480 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 PROX1Q92786 737 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 BCL2L2Q92843 193 aaPredicted RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 SLC35B4Q969S0 331 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SLC41A3Q96GZ6 507 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 RADILQ96JH8 1075 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 MUS81Q96NY9 551 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 OXGR1Q96P68 337 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 OR2M2Q96R28 347 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 PRR25Q96S07 402 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 CCL19Q99731 98 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SH3GL1Q99961 368 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 TMEM204Q9BSN7 226 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SF3B5Q9BWJ5 86 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 CXXC4Q9H2H0 198 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 ESRP2Q9H6T0 727 aaKnown RBP3.94□□□□□ -1.78
NUP54-206ENST00000508465 EFCAB1Q9HAE3 211 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 OBP2BQ9NPH6 170 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SLC17A5Q9NRA2 495 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 ARL8BQ9NVJ2 186 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 MED29Q9NX70 200 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 B3GAT1Q9P2W7 334 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 LAMP3Q9UQV4 416 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 RASD1Q9Y272 281 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SLC9A8Q9Y2E8 581 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 RNF115Q9Y4L5 304 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SLC25A15Q9Y619 301 aa3.94□□□□□ -1.78
NUP54-206ENST00000508465 SETD2Q9BYW2 2564 aaPredicted RBP3.93□□□□□ -1.78
NUP54-206ENST00000508465 CADP27708 2225 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 ELOVL7A1L3X0 281 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 TRAPPC13A5PLN9 417 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 TRIM64A6NGJ6 449 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 TRIM64BA6NI03 449 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 ZNF726A6NNF4 738 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 BBIP1A8MTZ0 92 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 SHISA9B4DS77 424 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 E7EQL1 145 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 ZNF587BE7ETH6 402 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 BLOC1S5-TXNDC5H3BN57 136 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 J3KTA2 159 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 CXCR6O00574 342 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 ABCD4O14678 606 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 RNF13O43567 381 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 TRAF3IP2O43734 574 aaPredicted RBP3.93□□□□□ -1.78
NUP54-206ENST00000508465 OR2T1O43869 369 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 SNX3O60493 162 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 NDUFS7O75251 213 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 VAMP5O95183 116 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 OR6A2O95222 327 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 HIST1H2ABP04908 130 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 PATE4P0C8F1 98 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 ADORA3P0DMS8 318 aa3.93□□□□□ -1.78
NUP54-206ENST00000508465 UMPSP11172 480 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms