RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 TUBG2Q9NRH3 451 aa11.89□□□□□ -0.51
PRPF40A-211ENST00000493468 TNFRSF19Q9NS68 423 aa11.89□□□□□ -0.51
PRPF40A-211ENST00000493468 ZNF229Q9UJW7 825 aa11.89□□□□□ -0.51
PRPF40A-211ENST00000493468 CLIC1O00299 241 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 ASAH2BP0C7U1 165 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 HOXB9P17482 250 aaPredicted RBP11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 GSTM3P21266 225 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 KITLGP21583 273 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 PSG4Q00888 419 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 C6orf10Q5SRN2 563 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 SAMD5Q5TGI4 173 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 REEP3Q6NUK4 255 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 Q6ZR03 302 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 FITM2Q8N6M3 262 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 OR2Z1Q8NG97 314 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 AKR7LQ8NHP1 331 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 TBC1D15Q8TC07 691 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 C10orf82Q8WW14 230 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 ITLN1Q8WWA0 313 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 NEIL1Q96FI4 390 aaPredicted RBP11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 MAGEB18Q96M61 343 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 ZNF607Q96SK3 696 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 NUDT16L1Q9BRJ7 211 aaKnown RBP11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 TMEM165Q9HC07 324 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 ZIM2Q9NZV7 527 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 STX18Q9P2W9 335 aaKnown RBP11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 UGT2A1Q9Y4X1 527 aa11.88□□□□□ -0.51
PRPF40A-211ENST00000493468 DNAH3Q8TD57 4116 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 GMNCA6NCL1 334 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 G3V4G9 280 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 GPR137BO60478 399 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 CH25HO95992 272 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 RBMXP38159 391 aaKnown RBP11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 FGF12P61328 243 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 TAF11Q15544 211 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 TTMPQ5BVD1 217 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 SLC27A4Q6P1M0 643 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 ARL9Q6T311 187 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 NLRC3Q7RTR2 1065 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 ALDH16A1Q8IZ83 802 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 OR8B3Q8NGG8 313 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 NFKBIDQ8NI38 313 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 ASB10Q8WXI3 467 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 GTF2H4Q92759 462 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 C4orf45Q96LM5 186 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 OR2V2Q96R30 315 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 OR8B2Q96RD0 313 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 WFDC6Q9BQY6 131 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 OR2H1Q9GZK4 316 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 PAIP1Q9H074 479 aaKnown RBP11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 WNT5BQ9H1J7 359 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 C16orf95Q9H693 158 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 GCM1Q9NP62 436 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.87□□□□□ -0.519e-6■□□□□ 9.4
PRPF40A-211ENST00000493468 PNPOQ9NVS9 261 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 SLC13A4Q9UKG4 626 aa11.87□□□□□ -0.51
PRPF40A-211ENST00000493468 A0A1W2PRG6 482 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 WDR91A4D1P6 747 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 MCIDASD6RGH6 385 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 PHYHO14832 338 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 TRMUO75648 421 aaKnown RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 HIST1H2ABP04908 130 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 CSF1P09603 554 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 THRBP10828 461 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 NR2C1P13056 603 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 ACADSP16219 412 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 CDAP32320 146 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 DAP3P51398 398 aaKnown RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 CDK6Q00534 326 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 GCNT6Q5T4J0 391 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 FAM27BQ5VT28 67 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 HIST3H2AQ7L7L0 130 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 NANOGNBQ7Z5D8 188 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 PTOV1Q86YD1 416 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 LDLRAD3Q86YD5 345 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 ZSCAN4Q8NAM6 433 aaPredicted RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 HIST1H2ACQ93077 130 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 NMD3Q96D46 503 aaKnown RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 ZNF426Q9BUY5 554 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 ROPN1BQ9BZX4 212 aaPredicted RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 ROPN1Q9HAT0 212 aaPredicted RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 SDR39U1Q9NRG7 319 aaPredicted RBP11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 TBCCD1Q9NVR7 557 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 KIF17Q9P2E2 1029 aa11.86□□□□□ -0.51
PRPF40A-211ENST00000493468 NPIPB13A6NJU9 1138 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 TRPC5OSA6NMA1 111 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 NPIPB4C9JG80 1138 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 H0YL77 283 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 P2RY10O00398 339 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 ENSAO43768 121 aaKnown RBP11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 SERPINB7O75635 380 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 LYPD3O95274 346 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 SLC2A10O95528 541 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 OPN1MWP04001 364 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 CST2P09228 141 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 OPN1MW2P0DN77 364 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 OPN1MW3P0DN78 364 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 EPHA3P29320 983 aa11.85□□□□□ -0.51
PRPF40A-211ENST00000493468 PITPNBP48739 271 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms