RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PDIK1LQ8N165 341 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 MREGQ8N565 214 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 CYB561D1Q8N8Q1 229 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 ZFP41Q8N8Y5 198 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 OR7G2Q8NG99 324 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 OR10R2Q8NGX6 335 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 ZFP90Q8TF47 636 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 PIK3IP1Q96FE7 263 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 COL21A1Q96P44 957 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 PLIN2Q99541 437 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 CHP1Q99653 195 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 ATP5SQ99766 215 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 MRPL37Q9BZE1 423 aaKnown RBP1.39□□□□□ -2.19
CPSF3-205ENST00000489629 LINC00597Q9H2U6 94 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 RPF2Q9H7B2 306 aaKnown RBP1.39□□□□□ -2.19
CPSF3-205ENST00000489629 CRLF2Q9HC73 371 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 NUP50Q9UKX7 468 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 DOCK9Q9BZ29 2069 aa1.39□□□□□ -2.19
CPSF3-205ENST00000489629 COL27A1Q8IZC6 1860 aaPredicted RBP1.39□□□□□ -2.19
CPSF3-205ENST00000489629 CENPJQ9HC77 1338 aaPredicted RBP1.39□□□□□ -2.19
CPSF3-205ENST00000489629 GOLGA6L7A0A1B0GV03 622 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SMCO2A6NFE2 343 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 NCF1BA6NI72 391 aaPredicted RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 HIDE1A8MVS5 230 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 NCF1CA8MVU1 366 aaPredicted RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 C9JVG2 144 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 H0YHG0 523 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CDC7O00311 574 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 LSM1O15116 133 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ANGPTL7O43827 346 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 OR2F2O95006 317 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CLIC3O95833 236 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 AGTP01019 485 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 OXTP01178 125 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 KRT14P02533 472 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 DCNP07585 359 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 GNAO1P09471 354 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SYKP43405 635 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 OR1G1P47890 313 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 UBE2AP49459 152 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 NUTF2P61970 127 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 YWHAGP61981 247 aaKnown RBP eCLIP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ACTA2P62736 377 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ACTG2P63267 376 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ACTC1P68032 377 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SLC7A9P82251 487 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SLC25A11Q02978 314 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ITIH4Q14624 930 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SPANXN2Q5MJ10 180 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 RAET1LQ5VY80 246 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ANKRD26P1Q6NSI1 321 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4L9Q6RFH8 374 aaPredicted RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 MBOAT1Q6ZNC8 495 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF493Q6ZR52 646 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CCDC73Q6ZRK6 1079 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 STRADAQ7RTN6 431 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 MYOCDQ8IZQ8 938 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 EID2Q8N6I1 236 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 OR10G4Q8NGN3 311 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 OR4S2Q8NH73 311 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 RHEBL1Q8TAI7 183 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CXorf40AQ8TE69 158 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CAPSLQ8WWF8 208 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 FRZBQ92765 325 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SLC38A4Q969I6 547 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 EXOSC8Q96B26 276 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 PRRC1Q96M27 445 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 TGS1Q96RS0 853 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 P2RX4Q99571 388 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 C11orf70Q9BRQ4 267 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 C20orf24Q9BUV8 137 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 TEKT3Q9BXF9 490 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 IFI27L2Q9H2X8 130 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 EXO5Q9H790 373 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 RETNQ9HD89 108 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 SLC40A1Q9NP59 571 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ZDHHC4Q9NPG8 344 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 AHSPQ9NZD4 102 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 PDP1Q9P0J1 537 aaPredicted RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF629Q9UEG4 869 aaPredicted RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CD84Q9UIB8 345 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 TBC1D24Q9ULP9 559 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 ING4Q9UNL4 249 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 PSG8Q9UQ74 426 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 MRPS18BQ9Y676 258 aaKnown RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 AKNAQ7Z591 1439 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 MN1Q10571 1320 aaPredicted RBP1.38□□□□□ -2.19
CPSF3-205ENST00000489629 CABIN1Q9Y6J0 2220 aa1.38□□□□□ -2.19
CPSF3-205ENST00000489629 USP47Q96K76 1375 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 DOCK8Q8NF50 2099 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 IGHV3-66A0A0C4DH42 116 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 TRBV11-1A0A0K0K1C0 115 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 CIB4A0PJX0 185 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 INS-IGF2F8WCM5 200 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 K7EMT4 169 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 WRBO00258 174 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 KMOO15229 486 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 AKR7A2O43488 359 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 AIFM1O95831 613 aa1.37□□□□□ -2.19
CPSF3-205ENST00000489629 TLX1NBP0CAT3 122 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms