RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PRRC1Q96M27 445 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 RBP7Q96R05 134 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ALG12Q9BV10 488 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 POLR2J2Q9GZM3 115 aaKnown RBP9.8□□□□□ -0.84
USP4-204ENST00000416417 POLR2J3Q9H1A7 115 aaKnown RBP9.8□□□□□ -0.84
USP4-204ENST00000416417 SMURF2Q9HAU4 748 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ESM1Q9NQ30 184 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 OPN4Q9UHM6 478 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ADAM18Q9Y3Q7 739 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 A0A0A6YYJ9 748 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 A0A0G2JMP0 313 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 A0A0X1KG70 313 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 ELOVL7A1L3X0 281 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 EFCAB9A8MZ26 197 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 CDC42EP2O14613 210 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 TIMM8AO60220 97 aaPredicted RBP9.79□□□□□ -0.84
USP4-204ENST00000416417 ZNF682O95780 498 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 IGF2P01344 180 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 IGHMP01871 453 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 CST2P09228 141 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 SBK2P0C263 348 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 TROVE2P10155 538 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP4-204ENST00000416417 THRBP10828 461 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 ZFP36P26651 326 aaKnown RBP9.79□□□□□ -0.84
USP4-204ENST00000416417 ERFP50548 548 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 HILS1P60008 231 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 SELENOWP63302 87 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 DBPQ10586 325 aaPredicted RBP9.79□□□□□ -0.84
USP4-204ENST00000416417 PSG7Q13046 419 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 C1orf94Q6P1W5 598 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 C1QL2Q7Z5L3 287 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 OAFQ86UD1 273 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 OR4M2Q8NGB6 313 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 GCDHQ92947 438 aaPredicted RBP9.79□□□□□ -0.84
USP4-204ENST00000416417 C4orf45Q96LM5 186 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 Q96M85 177 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 SIKE1Q9BRV8 207 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 FNDC11Q9BVV2 318 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 C1QTNF5Q9BXJ0 243 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 RERGLQ9H628 205 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 C7orf69Q9H7B7 122 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 POLE4Q9NR33 117 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 STX18Q9P2W9 335 aaKnown RBP9.79□□□□□ -0.84
USP4-204ENST00000416417 TIMM10BQ9Y5J6 103 aa9.79□□□□□ -0.84
USP4-204ENST00000416417 A0A087WUU8 490 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 NPIPB13A6NJU9 1138 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 BBIP1A8MTZ0 92 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 NPIPB4C9JG80 1138 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 VIMP08670 466 aaKnown RBP9.78□□□□□ -0.84
USP4-204ENST00000416417 RPL4P36578 427 aaKnown RBP9.78□□□□□ -0.84
USP4-204ENST00000416417 SLC9A3P48764 834 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 SEC61A1P61619 476 aaKnown RBP9.78□□□□□ -0.84
USP4-204ENST00000416417 TNFAIP6P98066 277 aaPredicted RBP9.78□□□□□ -0.84
USP4-204ENST00000416417 PRKCDQ05655 676 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 COQ5Q5HYK3 327 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 FAM209AQ5JX71 171 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 Q6ZR03 302 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 FOXL2NBQ6ZUU3 175 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 DUX5Q96PT3 197 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 MMP26Q9NRE1 261 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 GID8Q9NWU2 228 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 EGFL7Q9UHF1 273 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 IL20RAQ9UHF4 553 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 KLHL21Q9UJP4 597 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 STARD10Q9Y365 291 aa9.78□□□□□ -0.84
USP4-204ENST00000416417 IGHV3-64DA0A0J9YX35 117 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 DOK2O60496 412 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 ABHD16AO95870 558 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 GPANK1O95872 356 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 IFNW1P05000 195 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 H2AFXP16104 143 aaPredicted RBP9.77□□□□□ -0.84
USP4-204ENST00000416417 NCK1P16333 377 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 MSR1P21757 451 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 GUCA1AP43080 201 aaPredicted RBP9.77□□□□□ -0.84
USP4-204ENST00000416417 HTR5AP47898 357 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 LIPEQ05469 1076 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 TRAM2Q15035 370 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 MAPRE2Q15555 327 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 MESTQ5EB52 335 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 ZNF730Q6ZMV8 503 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.77□□□□□ -0.84
USP4-204ENST00000416417 ALDH16A1Q8IZ83 802 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 OFCC1Q8IZS5 231 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 OR5AS1Q8N127 324 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 C3orf56Q8N813 242 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 ZDHHC22Q8N966 263 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 PCYOX1LQ8NBM8 494 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 OR2Z1Q8NG97 314 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 RASD2Q96D21 266 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 CMBLQ96DG6 245 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 EGLN1Q9GZT9 426 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 VIPAS39Q9H9C1 493 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 PPIAL4AQ9Y536 164 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 CAPN7Q9Y6W3 813 aa9.77□□□□□ -0.84
USP4-204ENST00000416417 ARHGAP32A7KAX9 2087 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 TEX13CA0A0J9YWL9 993 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 TMEM89A2RUT3 159 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 A6NIZ1 184 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 C12orf71A8MTZ7 269 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 TRIM77I1YAP6 450 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms