RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, human

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USB1-208	ENST00000563207	REG4	Q9BYZ8	158 aa		13.64	□□□□□ -0.23
USB1-208	ENST00000563207	GPRIN2	O60269	458 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	WNT11	O96014	354 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	CD40	P25942	277 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	SLC36A3	Q495N2	470 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	MEST	Q5EB52	335 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	CLEC12A	Q5QGZ9	265 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	SLC27A4	Q6P1M0	643 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	KLHL24	Q6TFL4	600 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	DTX2	Q86UW9	622 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	BCL2L2	Q92843	193 aa	Predicted RBP	13.63	□□□□□ -0.23
USB1-208	ENST00000563207	RASD2	Q96D21	266 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	TRMT61A	Q96FX7	289 aa	Known RBP	13.63	□□□□□ -0.23
USB1-208	ENST00000563207	FOXB1	Q99853	325 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	C9orf16	Q9BUW7	83 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	PLA2G12A	Q9BZM1	189 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	SLC17A5	Q9NRA2	495 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	KRT84	Q9NSB2	600 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	VSX1	Q9NZR4	365 aa	Predicted RBP	13.63	□□□□□ -0.23
USB1-208	ENST00000563207	AMDHD2	Q9Y303	409 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	JMJD1C	Q15652	2540 aa		13.63	□□□□□ -0.23
USB1-208	ENST00000563207	SLC22A23	A1A5C7	686 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	SSX4	O60224	188 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	TMCC2	O75069	709 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	SOX14	O95416	240 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	BAG2	O95816	211 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	CDH2	P19022	906 aa	Predicted RBP	13.62	□□□□□ -0.23
USB1-208	ENST00000563207	NPR2	P20594	1047 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	GUCA1A	P43080	201 aa	Predicted RBP	13.62	□□□□□ -0.23
USB1-208	ENST00000563207	GIPR	P48546	466 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	ARF1	P84077	181 aa	Known RBP	13.62	□□□□□ -0.23
USB1-208	ENST00000563207	PPP2R2B	Q00005	443 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	MYBPC1	Q00872	1141 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	C11orf71	Q6IPW1	123 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	DNM1P34	Q6PK57	102 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	SLC25A47	Q6Q0C1	308 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	SLC22A25	Q6T423	547 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	DPPA2	Q7Z7J5	298 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	JAZF1	Q86VZ6	243 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	OR8D4	Q8NGM9	314 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	CACNG6	Q9BXT2	260 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	DCLRE1B	Q9H816	532 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	KLHL21	Q9UJP4	597 aa		13.62	□□□□□ -0.23
USB1-208	ENST00000563207	HEATR1	Q9H583	2144 aa	Known RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	HIVEP2	P31629	2446 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	IGHV4-30-2	A0A087WSY4	118 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	ARPC4-TTLL3	A0A0A6YYG9	625 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	SAC3D1	A6NKF1	404 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	SOCS2	O14508	198 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	LY6H	O94772	140 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	FARS2	O95363	451 aa	Known RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	REN	P00797	406 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	IFNG	P01579	166 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	HMGN1	P05114	100 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	OR8G3P	P0DMU2	310 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	HIST1H1C	P16403	213 aa	Known RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	IGFBP5	P24593	272 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	CRABP1	P29762	137 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	TTK	P33981	857 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	GRK5	P34947	590 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	CRISP1	P54107	249 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	UBE2N	P61088	152 aa	Known RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	ELF3	P78545	371 aa	Predicted RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	CDK5	Q00535	292 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	TBRG1	Q3YBR2	411 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	HIKESHI	Q53FT3	197 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	ZNF813	Q6ZN06	617 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	ZNF837	Q96EG3	531 aa	Predicted RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	C8orf4	Q9NR00	106 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	TMEM38B	Q9NVV0	291 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	USE1	Q9NZ43	259 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	ORC6	Q9Y5N6	252 aa		13.61	□□□□□ -0.23
USB1-208	ENST00000563207	CHD3	Q12873	2000 aa	Known RBP	13.61	□□□□□ -0.23
USB1-208	ENST00000563207	YLPM1	P49750	1951 aa	Known RBP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	IGFBP1	P08833	259 aa	Predicted RBP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	POU1F1	P28069	291 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	CDKN2A	P42771	156 aa	Known RBP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	ALDH3A2	P51648	485 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	MRPS34	P82930	218 aa	Known RBP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	C3orf36	Q3SXR2	165 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	LEG1	Q6P5S2	330 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	TMEM108	Q6UXF1	575 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	PTCHD4	Q6ZW05	846 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	SLC22A24	Q8N4F4	322 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	FAM169B	Q8N8A8	192 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	OR4K13	Q8NH42	304 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	NANOS1	Q8WY41	292 aa	Known RBP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	CIB1	Q99828	191 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	DHRS9	Q9BPW9	319 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	WAC	Q9BTA9	647 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	PRRG3	Q9BZD7	231 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	NELFA	Q9H3P2	528 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	SIAE	Q9HAT2	523 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	SLC25A19	Q9HC21	320 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	CMC2	Q9NRP2	79 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207	TMEFF2	Q9UIK5	374 aa	Predicted RBP	13.6	□□□□□ -0.23
USB1-208	ENST00000563207	POU2F3	Q9UKI9	436 aa		13.6	□□□□□ -0.23
USB1-208	ENST00000563207		A0A096LNT2	108 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms