RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ACHEP22303 614 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 APLNRP35414 380 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 GPR6P46095 362 aaPredicted RBP14.22□□□□□ -0.13
USP40-212ENST00000473191 PLP2Q04941 152 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 ENDOGQ14249 297 aaKnown RBP14.22□□□□□ -0.13
USP40-212ENST00000473191 IFI44LQ53G44 452 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 THEM4Q5T1C6 240 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 AVPI1Q5T686 147 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 ZNF730Q6ZMV8 503 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 RFPL4BQ6ZWI9 263 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 FKBP9P1Q75LS8 142 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 OAFQ86UD1 273 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 GEMIN6Q8WXD5 167 aaKnown RBP14.22□□□□□ -0.13
USP40-212ENST00000473191 ACOT11Q8WXI4 607 aaPredicted RBP14.22□□□□□ -0.13
USP40-212ENST00000473191 TMEM158Q8WZ71 300 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 LZICQ8WZA0 190 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 HPS1Q92902 700 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 ELAC2Q9BQ52 826 aaKnown RBP14.22□□□□□ -0.13
USP40-212ENST00000473191 OR2H1Q9GZK4 316 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 MYLK2Q9H1R3 596 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 SMURF2Q9HAU4 748 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 HINT3Q9NQE9 182 aaKnown RBP14.22□□□□□ -0.13
USP40-212ENST00000473191 EGFL7Q9UHF1 273 aa14.22□□□□□ -0.13
USP40-212ENST00000473191 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.21□□□□□ -0.139e-8■■■■■ 29.1
USP40-212ENST00000473191 A0A1W2PPL8 197 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 SLC22A23A1A5C7 686 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 C5orf49A4QMS7 147 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 GSTA4O15217 222 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 PPIHO43447 177 aaKnown RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 DIRAS1O95057 198 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 RAD52P43351 418 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 SLC9A3P48764 834 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 TSTQ16762 297 aaKnown RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 MESTQ5EB52 335 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 FAM27BQ5VT28 67 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 ZNF774Q6NX45 483 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 RINLQ6ZS11 566 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 FOXL2NBQ6ZUU3 175 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 MBOAT2Q6ZWT7 520 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 HDDC2Q7Z4H3 204 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 ARPINQ7Z6K5 226 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 DPPA2Q7Z7J5 298 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 RNF148Q8N7C7 305 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 FAM156AQ8NDB6 213 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 OR1J2Q8NGS2 313 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 SLC25A40Q8TBP6 338 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 SLC7A13Q8TCU3 470 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 IPCEF1Q8WWN9 437 aaPredicted RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 C11orf40Q8WZ69 217 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 FAM162AQ96A26 154 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 MARS2Q96GW9 593 aaKnown RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 FAM46AQ96IP4 442 aaKnown RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 Q96M85 177 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 HOPXQ9BPY8 73 aaPredicted RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 ALG12Q9BV10 488 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 BCL2L14Q9BZR8 327 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 C1orf198Q9H425 327 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 POFUT1Q9H488 388 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 EFCAB1Q9HAE3 211 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 NMNAT1Q9HAN9 279 aaPredicted RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 EMC7Q9NPA0 242 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 ABCD2Q9UBJ2 740 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 IL20RAQ9UHF4 553 aa14.21□□□□□ -0.13
USP40-212ENST00000473191 TMEFF2Q9UIK5 374 aaPredicted RBP14.21□□□□□ -0.13
USP40-212ENST00000473191 CCDC22O60826 627 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 ENTPD5O75356 428 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 PTHP01270 115 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 FXYD6P3P58550 94 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 PSME3P61289 254 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 SEC23BQ15437 767 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 HSP90B2PQ58FF3 399 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 THSD4Q6ZMP0 1018 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 FAM122BQ7Z309 247 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 RBP7Q96R05 134 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 KCTD14Q9BQ13 255 aaPredicted RBP14.2□□□□□ -0.14
USP40-212ENST00000473191 ZNF416Q9BWM5 594 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 OR2J1Q9GZK6 312 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 KCNN2Q9H2S1 579 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 STX18Q9P2W9 335 aaKnown RBP14.2□□□□□ -0.14
USP40-212ENST00000473191 ENPP4Q9Y6X5 453 aa14.2□□□□□ -0.14
USP40-212ENST00000473191 ZSCAN5BA6NJL1 495 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 SPRY3O43610 288 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 MPZL1O95297 269 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 GPANK1O95872 356 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 IGHV1-46P01743 117 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 IGHV3-13P01766 116 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 CST2P09228 141 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 GAAP10253 952 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 MMP15P51511 669 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 LMO4P61968 165 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 MVKQ03426 396 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 TAF11Q15544 211 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 HACD2Q6Y1H2 254 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 TMPRSS11FQ6ZWK6 438 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 ABHD4Q8TB40 342 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 RASD2Q96D21 266 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 GPA33Q99795 319 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 C19orf24Q9BVV8 132 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 FAM107BQ9H098 131 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 LRMDAQ9H2I8 198 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms