RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 A0A0B4J2A0 478 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 TCAPO15273 167 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 FADS1O60427 444 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 SORBS2O94875 1100 aaKnown RBP6.6□□□□□ -1.35
UPF2-203ENST00000397053 TSPAN12O95859 305 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 CHRM2P08172 466 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 QDPRP09417 244 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 BMP5P22003 454 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 OR5I1Q13606 314 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 EXOSC2Q13868 293 aaKnown RBP6.6□□□□□ -1.35
UPF2-203ENST00000397053 EBPQ15125 230 aaKnown RBP6.6□□□□□ -1.35
UPF2-203ENST00000397053 LEXMQ3ZCV2 418 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 TMEM52BQ4KMG9 183 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 ZNF385BQ569K4 471 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 SLC48A1Q6P1K1 146 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 DOK3Q7L591 496 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 OR1S2Q8NGQ3 325 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 ZMAT3Q9HA38 289 aaKnown RBP6.6□□□□□ -1.35
UPF2-203ENST00000397053 MTCH1Q9NZJ7 389 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 ASH2LQ9UBL3 628 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 SHPKQ9UHJ6 478 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 PGAP2Q9UHJ9 254 aa6.6□□□□□ -1.35
UPF2-203ENST00000397053 POM121BA6NF01 834 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ZNF785A8K8V0 405 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TARM1B6A8C7 271 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 G3V2L1 256 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TSTD3H0UI37 97 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 XRCC3O43542 346 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 XRCC2O43543 280 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 LY86O95711 162 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 SNRPBP14678 240 aaKnown RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 FOLR1P15328 257 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 CD22P20273 847 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 MYF6P23409 242 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 CSNK1G2P78368 415 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 PRTGQ2VWP7 1150 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 MBOAT2Q6ZWT7 520 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TMEM130Q8N3G9 435 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 SLC16A11Q8NCK7 471 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 PDLIM5Q96HC4 596 aaKnown RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 SARGQ9BW04 601 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 MMP28Q9H239 520 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 SERTM2A0A1B0GWG4 89 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 OR7C2O60412 319 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 MT-CO3P00414 261 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ADIRFQ15847 76 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 RPL7L1Q6DKI1 246 aaKnown RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 PRSS35Q8N3Z0 413 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 EDARADDQ8WWZ3 215 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 PATE1Q8WXA2 126 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TAAR9Q96RI9 348 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 LHPPQ9H008 270 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 SIAEQ9HAT2 523 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 DLL4Q9NR61 685 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TAS2R16Q9NYV7 291 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ADAMTS5Q9UNA0 930 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 R4GN57 208 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TMEM202A6NGA9 273 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 M0R135 149 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 PPP6CO00743 305 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 DSCR3O14972 297 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 PRKRAO75569 313 aaKnown RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 FBP1P09467 338 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ELLP55199 621 aaPredicted RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 HSF1Q00613 529 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TIGITQ495A1 244 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TMEM211Q6ICI0 200 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 C17orf78Q8N4C9 275 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ST8SIA4Q92187 359 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ZNF799Q96GE5 643 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 BORCS6Q96GS4 357 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 BCL7BQ9BQE9 202 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 NIPSNAP3BQ9BS92 247 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 GLIPR2Q9H4G4 154 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 EMC7Q9NPA0 242 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TBC1D29Q9UFV1 150 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 OSGIN1Q9UJX0 560 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 RAB22AQ9UL26 194 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ZNF835Q9Y2P0 537 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 A0A1W2PPC4 97 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 DBX1A6NMT0 343 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 DNASE2O00115 360 aaPredicted RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 SYT5O00445 386 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 GABRPO00591 440 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 HOXC11O43248 304 aaPredicted RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 OR2J3O76001 311 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 GABRA5P31644 462 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 CCR5P51681 352 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 RPL27P61353 136 aaKnown RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 MLLT11Q13015 90 aaPredicted RBP6.59□□□□□ -1.35
UPF2-203ENST00000397053 C4orf17Q53FE4 359 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 UBE2NLQ5JXB2 153 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 ELP4Q96EB1 424 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 NT5DC2Q9H857 520 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 LTB4R2Q9NPC1 389 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 NRIP3Q9NQ35 241 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 SLC23A1Q9UHI7 598 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 FBXL2Q9UKC9 423 aa6.59□□□□□ -1.35
UPF2-203ENST00000397053 TRGV5A0A0B4J1U4 118 aa6.58□□□□□ -1.36
UPF2-203ENST00000397053 AQP7P3A6NL99 342 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms