RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LIPEQ05469 1076 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 LRRC63Q05C16 580 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 MADCAM1Q13477 382 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PRPSAP1Q14558 356 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PTPN20Q4JDL3 420 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ANKRD22Q5VYY1 191 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 C22orf42Q6IC83 251 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 DNAJC24Q6P3W2 148 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM220Q6QAJ8 160 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF493Q6ZR52 646 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 NCCRP1Q6ZVX7 275 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 H2AFVQ71UI9 128 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 BZW1Q7L1Q6 419 aaKnown RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 STRADAQ7RTN6 431 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 OAFQ86UD1 273 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 STPG2Q8N412 459 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ZFP41Q8N8Y5 198 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 DUSP18Q8NEJ0 188 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 OR52K2Q8NGK3 314 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 CAPSLQ8WWF8 208 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ECHDC3Q96DC8 303 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SMIM10Q96HG1 83 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 CEP170P1Q96L14 293 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PRRC1Q96M27 445 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 C11orf70Q9BRQ4 267 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 MRPL37Q9BZE1 423 aaKnown RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 HRASLS2Q9NWW9 162 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ST3GAL6Q9Y274 331 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 WSB1Q9Y6I7 421 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 WDR62O43379 1518 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 MTCL1Q9Y4B5 1905 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 WRBO00258 174 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 SRP72O76094 671 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 OR2F2O95006 317 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 FABP3P05413 133 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 MYL2P10916 166 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 EIF2S2P20042 333 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 BCKDHBP21953 392 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 UQCRFS1P47985 274 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CX3CR1P49238 355 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ADARB1P78563 741 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 MXD1Q05195 221 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 C1orf185Q5T7R7 199 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 LYPD2Q6UXB3 125 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CERS6Q6ZMG9 384 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 OFCC1Q8IZS5 231 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 IQCKQ8N0W5 287 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 MARCH1Q8TCQ1 289 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CD300LFQ8TDQ1 290 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 NRGNQ92686 78 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 FAM210BQ96KR6 192 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 NAP1L5Q96NT1 182 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 TAAR1Q96RJ0 339 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 TGS1Q96RS0 853 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 SLC25A39Q9BZJ4 359 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 EXO5Q9H790 373 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 BEX1Q9HBH7 125 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 RETNQ9HD89 108 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 GPATCH2LQ9NWQ4 482 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 RBAKQ9NYW8 714 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF629Q9UEG4 869 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CD84Q9UIB8 345 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 KMT2BQ9UMN6 2715 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 INSRP06213 1382 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 AKNAQ7Z591 1439 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 IGLV11-55A0A075B6I3 123 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 A0A1B0GW55 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CHST1O43916 411 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CACNG3O60359 315 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 HUS1O60921 280 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ERCC1P07992 297 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 PLEKP08567 350 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 FGF4P08620 206 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4L2P0CJ85 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4L3P0CJ86 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4L5P0CJ88 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4L6P0CJ89 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4L7P0CJ90 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 PRPS2P11908 318 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ANXA8P13928 327 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CDKN2BP42772 138 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CYB561P49447 251 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CRISP1P54107 249 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 EIF3EP60228 445 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 STXBP1P61764 594 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ILKQ13418 452 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 GGTLC2Q14390 218 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 POU2AF1Q16633 256 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM255AQ5JRV8 349 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 HES5Q5TA89 166 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 AGBL2Q5U5Z8 902 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ANXA8L1Q5VT79 327 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM53Q6P2H8 277 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4L9Q6RFH8 374 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 CLEC2AQ6UVW9 174 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 TEX43Q6ZNM6 134 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ABHD13Q7L211 337 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 Q8N976 141 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 LYPD6BQ8NI32 183 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 ZFP90Q8TF47 636 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms