RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 OR11H4Q8NGC9 324 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 NUBPLQ8TB37 319 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 EMC7Q9NPA0 242 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 NPIPA1Q9UND3 350 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 EML6Q6ZMW3 1958 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 SULT1B1O43704 296 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 SSNA1O43805 119 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 TMEM127O75204 238 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 PEX14O75381 377 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 GLSO94925 669 aaPredicted RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 ECDO95905 644 aaPredicted RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 SQSTM1Q13501 440 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 KCTD18Q6PI47 426 aaPredicted RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 OR52N5Q8NH56 324 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 TRAF4Q9BUZ4 470 aaPredicted RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 PHF3Q92576 2039 aaKnown RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 ARPC1BO15143 372 aaKnown RBP17.98■□□□□ 0.47
VPS53-201ENST00000291074 TSC22D2O75157 780 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 KDM4BO94953 1096 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 PSMB1P20618 241 aaKnown RBP17.98■□□□□ 0.47
VPS53-201ENST00000291074 CRABP1P29762 137 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 BLVRAP53004 296 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 TLE3Q04726 772 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 GRPEL2Q8TAA5 225 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 EMC9Q9Y3B6 208 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 ACOT7O00154 380 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 EFNA2O43921 213 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 POU3F4P49335 361 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 RAG2P55895 527 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 ZP1P60852 638 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 ZNF385CQ66K41 422 aaPredicted RBP17.98■□□□□ 0.47
VPS53-201ENST00000291074 CORO6Q6QEF8 472 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 C5orf46Q6UWT4 87 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 Q6ZTK2 550 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 H1FNTQ75WM6 255 aaPredicted RBP17.98■□□□□ 0.47
VPS53-201ENST00000291074 CATSPERDQ86XM0 798 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 SLC26A10Q8NG04 563 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 OR10G3Q8NGC4 313 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 OR2I1PQ8NGU4 316 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 C5orf34Q96MH7 638 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 SPSB2Q99619 263 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 EMC6Q9BV81 110 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 MGAT4AQ9UM21 535 aa17.98■□□□□ 0.47
VPS53-201ENST00000291074 FCER2P06734 321 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 AP3S2P59780 193 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 FOXK1P85037 733 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 LINC00303Q3SY05 128 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 FAM209AQ5JX71 171 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 DCXRQ7Z4W1 244 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 OR5M1Q8NGP8 315 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 MFSD8Q8NHS3 518 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 SAP25Q8TEE9 199 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 CRB3Q9BUF7 120 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 TMEM185BQ9H7F4 350 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 ING4Q9UNL4 249 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 DHDHQ9UQ10 334 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 OR2J2O76002 312 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 ALDOBP05062 364 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 SULT1A3P0DMM9 295 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 SULT1A4P0DMN0 295 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 FOSL2P15408 326 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 APOBEC1P41238 236 aaKnown RBP17.97■□□□□ 0.47
VPS53-201ENST00000291074 HSF1Q00613 529 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 GUCA2AQ02747 115 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 CPEB2Q7Z5Q1 589 aaKnown RBP17.97■□□□□ 0.47
VPS53-201ENST00000291074 ASB5Q8WWX0 329 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 SNAPC3Q92966 411 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 DUSP23Q9BVJ7 150 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 ACTR6Q9GZN1 396 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 OCIAD1Q9NX40 245 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 TAS2R4Q9NYW5 299 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 PPP4R1LQ9P1A2 415 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 SLC23A1Q9UHI7 598 aa17.97■□□□□ 0.47
VPS53-201ENST00000291074 LOC101059948A0A1B0GTJ6 334 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 CTAG2O75638 210 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 HTR2BP41595 481 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 TMEM225Q6GV28 225 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 ZNF431Q8TF32 576 aaPredicted RBP17.96■□□□□ 0.47
VPS53-201ENST00000291074 KCNK17Q96T54 332 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 SEC22CQ9BRL7 303 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 CHST11Q9NPF2 352 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 MEIS3P1A6NDR6 274 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 CENPBD1B2RD01 187 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 EIF1AYO14602 144 aaKnown RBP17.96■□□□□ 0.47
VPS53-201ENST00000291074 XRCC3O43542 346 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 ZNF823P16415 610 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 RAD52P43351 418 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 HLA-BQ31612 363 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 C2orf76Q3KRA6 126 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 OLFML2AQ68BL7 652 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 EID2Q8N6I1 236 aa17.96■□□□□ 0.47
VPS53-201ENST00000291074 PPIEQ9UNP9 301 aaKnown RBP17.96■□□□□ 0.47
VPS53-201ENST00000291074 VSTM2BA6NLU5 285 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 LMX1BO60663 402 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 PNLIPP16233 465 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 PTGS2P35354 604 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 MNDAP41218 407 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 PTGDSP41222 190 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 ARPC4P59998 168 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 MRPS10P82664 201 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms