RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PSME1Q06323 249 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 NCOA4Q13772 614 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 MSMPQ1L6U9 139 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 GDF6Q6KF10 455 aaPredicted RBP2.95□□□□□ -1.94
USP3-209ENST00000558925 ADAMTSL4Q6UY14 1074 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 DEPDC4Q8N2C3 294 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 IL22RA1Q8N6P7 574 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 UTP4Q969X6 686 aaKnown RBP2.95□□□□□ -1.94
USP3-209ENST00000558925 CCDC39Q9UFE4 941 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.95□□□□□ -1.94
USP3-209ENST00000558925 USP17L3A6NCW0 530 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 USP17L4A6NCW7 530 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 TMEM88BA6NKF7 163 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 USP17L5A8MUK1 530 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 ATP9BO43861 1147 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 SASH3O75995 380 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 PAPLNO95428 1278 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 SKIP12755 728 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 EIF2AK2P19525 551 aaKnown RBP2.94□□□□□ -1.94
USP3-209ENST00000558925 INPP5BP32019 993 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 EML3Q32P44 896 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 KANK4Q5T7N3 995 aaPredicted RBP2.94□□□□□ -1.94
USP3-209ENST00000558925 USP17L2Q6R6M4 530 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 KIAA1211Q6ZU35 1233 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 USP17L1Q7RTZ2 530 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 FAM20CQ8IXL6 584 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 STK32AQ8WU08 396 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 PLD4Q96BZ4 506 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 ASIC4Q96FT7 647 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 MYRFLQ96LU7 910 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 GZF1Q9H116 711 aaPredicted RBP2.94□□□□□ -1.94
USP3-209ENST00000558925 ZMIZ1Q9ULJ6 1067 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 TRIM33Q9UPN9 1127 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 NOD1Q9Y239 953 aa2.94□□□□□ -1.94
USP3-209ENST00000558925 CARMIL2Q6F5E8 1435 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 DBX1A6NMT0 343 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 WDR64B1ANS9 1081 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 DKK1O94907 266 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 ATG7O95352 703 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 RARAP10276 462 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 CLDN10P78369 228 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 TMEM164Q5U3C3 297 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 IER5Q5VY09 327 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 TXNDC11Q6PKC3 985 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 ACAD11Q709F0 780 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 TSEN2Q8NCE0 465 aaKnown RBP2.93□□□□□ -1.94
USP3-209ENST00000558925 TPCN2Q8NHX9 752 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 GAS2L2Q8NHY3 880 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 NGLY1Q96IV0 654 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 FAM83CQ9BQN1 747 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 C2orf49Q9BVC5 232 aaPredicted RBP2.93□□□□□ -1.94
USP3-209ENST00000558925 SLAIN2Q9P270 581 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 USTQ9Y2C2 406 aa2.93□□□□□ -1.94
USP3-209ENST00000558925 ACIN1Q9UKV3 1341 aaKnown RBP2.93□□□□□ -1.94
USP3-209ENST00000558925 TGFBR3LH3BV60 316 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 LINC01387J3KSC0 135 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 DDX3YO15523 660 aaKnown RBP2.92□□□□□ -1.94
USP3-209ENST00000558925 PPP1R12BO60237 982 aaPredicted RBP2.92□□□□□ -1.94
USP3-209ENST00000558925 ADAM11O75078 769 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 PRNPP04156 253 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 NRLP54845 237 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 PCSK7Q16549 785 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 UVSSAQ2YD98 709 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 CRTC2Q53ET0 693 aaPredicted RBP2.92□□□□□ -1.94
USP3-209ENST00000558925 CILP2Q8IUL8 1156 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 CLEC10AQ8IUN9 316 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 FOXD4L4Q8WXT5 416 aaPredicted RBP2.92□□□□□ -1.94
USP3-209ENST00000558925 MFSD14AQ96MC6 490 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 NSUN5Q96P11 429 aaKnown RBP2.92□□□□□ -1.94
USP3-209ENST00000558925 PIM2Q9P1W9 311 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 USP20Q9Y2K6 914 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 CCDC9Q9Y3X0 531 aaKnown RBP2.92□□□□□ -1.94
USP3-209ENST00000558925 IVNS1ABPQ9Y6Y0 642 aa2.92□□□□□ -1.94
USP3-209ENST00000558925 LOC102724428A0A0B4J2F2 783 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L15C9J2P7 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L10C9JJH3 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L13C9JLJ4 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L12C9JPN9 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L11C9JVI0 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L21D6R901 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L18D6R9N7 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L22D6RA61 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L17D6RBQ6 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L19D6RCP7 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L20D6RJB6 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 BRD1O95696 1058 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 F13BP05160 661 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 BMP3P12645 472 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 SCNN1AP37088 669 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 PREPP48147 710 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 IDH3AP50213 366 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 SIK1P57059 783 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 USP17L24Q0WX57 530 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 TMCO4Q5TGY1 634 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 CCDC102BQ68D86 513 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 BEND4Q6ZU67 534 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 NPM2Q86SE8 214 aaKnown RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 PLEKHM2Q8IWE5 1019 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 UBASH3BQ8TF42 649 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms