RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 IFIT1BQ5T764 474 aaKnown RBP12.23□□□□□ -0.45
ACTN1-216ENST00000556083 KLHL10Q6JEL2 608 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 NAA16Q6N069 864 aaPredicted RBP12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TTC6Q86TZ1 520 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 FAM177A1Q8N128 213 aaPredicted RBP12.23□□□□□ -0.45
ACTN1-216ENST00000556083 ZSCAN22P10073 491 aaPredicted RBP12.23□□□□□ -0.45
ACTN1-216ENST00000556083 NBPF14Q5TI25 921 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 MRPS27Q92552 414 aaKnown RBP12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TTC14Q96N46 770 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TBC1D32Q96NH3 1257 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 SPAG5Q96R06 1193 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 PNMA2Q9UL42 364 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TBX22Q9Y458 520 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 RIMS2Q9UQ26 1411 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 AOX1Q06278 1338 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TUBB2AQ13885 445 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 SKIDA1Q1XH10 827 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 STK11IPQ8N1F8 1099 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 TUBB2BQ9BVA1 445 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 ZBTB3Q9H5J0 574 aa12.23□□□□□ -0.45
ACTN1-216ENST00000556083 IL2RBP14784 551 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 BMS1Q14692 1282 aaKnown RBP12.22□□□□□ -0.45
ACTN1-216ENST00000556083 TBC1D9Q6ZT07 1266 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 JAKMIP2Q96AA8 810 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 NSRP1Q9H0G5 558 aaKnown RBP12.22□□□□□ -0.45
ACTN1-216ENST00000556083 NDC80O14777 642 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 AKR1B10O60218 316 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 XPCQ01831 940 aaPredicted RBP12.22□□□□□ -0.45
ACTN1-216ENST00000556083 HS1BP3Q53T59 392 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 MCTP2Q6DN12 878 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 CEP112Q8N8E3 955 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 N4BP3O15049 544 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 HS2ST1Q7LGA3 356 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 CCDC97Q96F63 343 aaPredicted RBP12.22□□□□□ -0.45
ACTN1-216ENST00000556083 TRIM47Q96LD4 638 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 TRIM75PA6NK02 468 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 PRC1O43663 620 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 TCERG1LQ5VWI1 586 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 LRRC59Q96AG4 307 aaKnown RBP12.22□□□□□ -0.45
ACTN1-216ENST00000556083 HOMER2Q9NSB8 354 aa12.22□□□□□ -0.45
ACTN1-216ENST00000556083 RPL13P26373 211 aaKnown RBP12.21□□□□□ -0.45
ACTN1-216ENST00000556083 POLD1P28340 1107 aa12.21□□□□□ -0.45
ACTN1-216ENST00000556083 SNX16P57768 344 aa12.21□□□□□ -0.45
ACTN1-216ENST00000556083 KRT79Q5XKE5 535 aa12.21□□□□□ -0.45
ACTN1-216ENST00000556083 RAPGEF6Q8TEU7 1601 aa12.21□□□□□ -0.45
ACTN1-216ENST00000556083 DDB1Q16531 1140 aa12.21□□□□□ -0.45
ACTN1-216ENST00000556083 CCDC85AQ96PX6 553 aaPredicted RBP12.21□□□□□ -0.45
ACTN1-216ENST00000556083 PCDH11XQ9BZA7 1347 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 PCDH11YQ9BZA8 1340 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 TACC1O75410 805 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 TNNT1P13805 278 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 CYP7A1P22680 504 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 PDE6BP35913 854 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 CLUL1Q15846 466 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 FAM200AQ8TCP9 573 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 SLC26A6Q9BXS9 759 aa12.21□□□□□ -0.46
ACTN1-216ENST00000556083 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.21□□□□□ -0.46
ACTN1-216ENST00000556083 V9GYY5 206 aaPredicted RBP12.21□□□□□ -0.46
ACTN1-216ENST00000556083 IQCDQ96DY2 449 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 NPATQ14207 1427 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 KLF18A0A0U1RQI7 1052 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 STAT6P42226 847 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 SNW1Q13573 536 aaKnown RBP12.2□□□□□ -0.46
ACTN1-216ENST00000556083 RRP36Q96EU6 259 aaKnown RBP12.2□□□□□ -0.46
ACTN1-216ENST00000556083 THUMPD2Q9BTF0 503 aaKnown RBP12.2□□□□□ -0.46
ACTN1-216ENST00000556083 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.2□□□□□ -0.46
ACTN1-216ENST00000556083 ZC3H12CQ9C0D7 883 aaKnown RBP12.2□□□□□ -0.46
ACTN1-216ENST00000556083 WDR7Q9Y4E6 1490 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 CROCCP2Q86T23 111 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 ARFGAP2Q8N6H7 521 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 CEP83Q9Y592 693 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 A6NNZ2 444 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 TMCO5BA8MYB1 307 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 F6X3S4 739 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 PDE1AP54750 535 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 TUBB8Q3ZCM7 444 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 WDR78Q5VTH9 848 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 GABPB2Q8TAK5 448 aaPredicted RBP12.2□□□□□ -0.46
ACTN1-216ENST00000556083 ALG1Q9BT22 464 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 MIS18AQ9NYP9 233 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 FBXO3Q9UK99 471 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 DENND2AQ9ULE3 1009 aa12.2□□□□□ -0.46
ACTN1-216ENST00000556083 MAP3K5Q99683 1374 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 ADAMTS2O95450 1211 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 ARID4AP29374 1257 aaPredicted RBP12.19□□□□□ -0.46
ACTN1-216ENST00000556083 VWA3BQ502W6 1294 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 MICU3Q86XE3 530 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 TBC1D2Q9BYX2 928 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 HELLSQ9NRZ9 838 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 SAMM50Q9Y512 469 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 SPDYE3A6NKU9 549 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 SMARCC2Q8TAQ2 1214 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 CTNNBL1Q8WYA6 563 aaPredicted RBP12.19□□□□□ -0.46
ACTN1-216ENST00000556083 KRT86O43790 486 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 OPA1O60313 960 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 SPATA24Q86W54 205 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 ESYT1Q9BSJ8 1104 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 RTCBQ9Y3I0 505 aaKnown RBP12.19□□□□□ -0.46
ACTN1-216ENST00000556083 HLTFQ14527 1009 aaKnown RBP eCLIP12.19□□□□□ -0.46
ACTN1-216ENST00000556083 CCDC14Q49A88 953 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms