RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LRRC24Q50LG9 513 aa14.8□□□□□ -0.04
CUX1-210ENST00000497815 TMC4Q7Z404 712 aa14.8□□□□□ -0.04
CUX1-210ENST00000497815 SIRT2Q8IXJ6 389 aa14.8□□□□□ -0.04
CUX1-210ENST00000497815 SP8Q8IXZ3 490 aa14.8□□□□□ -0.04
CUX1-210ENST00000497815 SSH3Q8TE77 659 aa14.8□□□□□ -0.04
CUX1-210ENST00000497815 C7orf43Q8WVR3 580 aa14.8□□□□□ -0.04
CUX1-210ENST00000497815 BSDC1Q9NW68 430 aaPredicted RBP14.8□□□□□ -0.04
CUX1-210ENST00000497815 GPSM2P81274 684 aa14.79□□□□□ -0.04
CUX1-210ENST00000497815 CCDC93Q567U6 631 aa14.79□□□□□ -0.04
CUX1-210ENST00000497815 HELBQ8NG08 1087 aaPredicted RBP14.79□□□□□ -0.04
CUX1-210ENST00000497815 ANKIB1Q9P2G1 1089 aa14.79□□□□□ -0.04
CUX1-210ENST00000497815 MINPP1Q9UNW1 487 aa14.79□□□□□ -0.04
CUX1-210ENST00000497815 NSFL1CQ9UNZ2 370 aaKnown RBP14.79□□□□□ -0.04
CUX1-210ENST00000497815 EYA2O00167 538 aa14.78□□□□□ -0.04
CUX1-210ENST00000497815 HMMRO75330 724 aa14.78□□□□□ -0.04
CUX1-210ENST00000497815 SURF6O75683 361 aaKnown RBP14.78□□□□□ -0.04
CUX1-210ENST00000497815 SOGA3Q5TF21 947 aa14.78□□□□□ -0.04
CUX1-210ENST00000497815 ARHGAP27Q6ZUM4 889 aa14.78□□□□□ -0.04
CUX1-210ENST00000497815 COPRSQ9NQ92 184 aa14.78□□□□□ -0.04
CUX1-210ENST00000497815 TAF5LO75529 589 aa14.77□□□□□ -0.05
CUX1-210ENST00000497815 CHRNDQ07001 517 aa14.77□□□□□ -0.05
CUX1-210ENST00000497815 OS9Q13438 667 aaPredicted RBP14.77□□□□□ -0.05
CUX1-210ENST00000497815 AAMPQ13685 434 aa14.77□□□□□ -0.05
CUX1-210ENST00000497815 METTL24Q5JXM2 366 aa14.77□□□□□ -0.05
CUX1-210ENST00000497815 DPP8Q6V1X1 898 aaPredicted RBP14.77□□□□□ -0.05
CUX1-210ENST00000497815 MPNDQ8N594 471 aa14.77□□□□□ -0.05
CUX1-210ENST00000497815 RIPOR2Q9Y4F9 1068 aa14.77□□□□□ -0.05
CUX1-210ENST00000497815 RASSF7Q02833 373 aa14.76□□□□□ -0.05
CUX1-210ENST00000497815 G3BP1Q13283 466 aaKnown RBP eCLIP14.76□□□□□ -0.05
CUX1-210ENST00000497815 CC2D2BQ6DHV5 1058 aa14.76□□□□□ -0.05
CUX1-210ENST00000497815 ATG9AQ7Z3C6 839 aa14.76□□□□□ -0.05
CUX1-210ENST00000497815 RTKN2Q8IZC4 609 aa14.76□□□□□ -0.05
CUX1-210ENST00000497815 ANKRD2Q9GZV1 360 aa14.76□□□□□ -0.05
CUX1-210ENST00000497815 EXOC6BQ9Y2D4 811 aa14.76□□□□□ -0.05
CUX1-210ENST00000497815 LRRC37AA6NMS7 1700 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 XDHP47989 1333 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 MROH5Q6ZUA9 1318 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 WTIPA6NIX2 430 aaPredicted RBP14.75□□□□□ -0.05
CUX1-210ENST00000497815 C6orf229H3BNL8 230 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 APBB1O00213 710 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 CIAO1O76071 339 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 UFL1O94874 794 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 IL15P40933 162 aaPredicted RBP14.75□□□□□ -0.05
CUX1-210ENST00000497815 KCNJ4P48050 445 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 GPR101Q96P66 508 aaPredicted RBP14.75□□□□□ -0.05
CUX1-210ENST00000497815 BCL11AQ9H165 835 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 ARFGEF1Q9Y6D6 1849 aa14.75□□□□□ -0.05
CUX1-210ENST00000497815 SNAP23O00161 211 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 NFKBIEO00221 500 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 GRIN3BO60391 1043 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 TBC1D16Q8TBP0 767 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 TAOK3Q9H2K8 898 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 POLLQ9UGP5 575 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 GGA1Q9UJY5 639 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 FBXO3Q9UK99 471 aa14.74□□□□□ -0.05
CUX1-210ENST00000497815 FKBP4Q02790 459 aaKnown RBP eCLIP14.73□□□□□ -0.05
CUX1-210ENST00000497815 TFCP2Q12800 502 aa14.73□□□□□ -0.05
CUX1-210ENST00000497815 GRIPAP1Q4V328 841 aa14.73□□□□□ -0.05
CUX1-210ENST00000497815 ZNF277Q9NRM2 450 aaPredicted RBP14.73□□□□□ -0.05
CUX1-210ENST00000497815 PODXL2Q9NZ53 605 aa14.73□□□□□ -0.05
CUX1-210ENST00000497815 CEP126Q9P2H0 1117 aa14.73□□□□□ -0.05
CUX1-210ENST00000497815 NOP58Q9Y2X3 529 aaKnown RBP14.73□□□□□ -0.05
CUX1-210ENST00000497815 SNED1Q8TER0 1413 aa14.73□□□□□ -0.05
CUX1-210ENST00000497815 ZNF804BA4D1E1 1349 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 RIMBP2O15034 1052 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 SASH1O94885 1247 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 PDE8BO95263 885 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 ATP2B4P23634 1241 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 VGLL2Q8N8G2 317 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 SUPT20HQ8NEM7 779 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 RWDD1Q9H446 243 aaPredicted RBP14.72□□□□□ -0.05
CUX1-210ENST00000497815 DUOX1Q9NRD9 1551 aa14.72□□□□□ -0.05
CUX1-210ENST00000497815 IGHDP01880 384 aa14.71□□□□□ -0.05
CUX1-210ENST00000497815 KLRK1P26718 216 aa14.71□□□□□ -0.05
CUX1-210ENST00000497815 HDAC1Q13547 482 aaPredicted RBP14.71□□□□□ -0.05
CUX1-210ENST00000497815 AOC3Q16853 763 aa14.71□□□□□ -0.05
CUX1-210ENST00000497815 HSP90AB4PQ58FF6 505 aa14.71□□□□□ -0.05
CUX1-210ENST00000497815 PSMD1Q99460 953 aa14.71□□□□□ -0.05
CUX1-210ENST00000497815 RTFDC1Q9BY42 306 aaPredicted RBP14.71□□□□□ -0.05
CUX1-210ENST00000497815 LEMD3Q9Y2U8 911 aa14.71□□□□□ -0.05
CUX1-210ENST00000497815 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.71□□□□□ -0.05
CUX1-210ENST00000497815 LTBP1Q14766 1721 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 PPIP5K2O43314 1243 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 PUM3Q15397 648 aaKnown RBP14.7□□□□□ -0.06
CUX1-210ENST00000497815 WASHC4Q2M389 1173 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 ERC1Q8IUD2 1116 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 EYA3Q99504 573 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 DCTPP1Q9H773 170 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 A0A1B0GUL6 1792 aa14.7□□□□□ -0.06
CUX1-210ENST00000497815 FER1L6Q2WGJ9 1857 aa14.69□□□□□ -0.06
CUX1-210ENST00000497815 LTBP3Q9NS15 1303 aa14.69□□□□□ -0.06
CUX1-210ENST00000497815 GOLGB1Q14789 3259 aaKnown RBP14.69□□□□□ -0.06
CUX1-210ENST00000497815 IARSP41252 1262 aaKnown RBP14.69□□□□□ -0.06
CUX1-210ENST00000497815 PRELPP51888 382 aa14.69□□□□□ -0.06
CUX1-210ENST00000497815 ATP2B3Q16720 1220 aa14.69□□□□□ -0.06
CUX1-210ENST00000497815 RHPN1Q8TCX5 695 aa14.69□□□□□ -0.06
CUX1-210ENST00000497815 ZC3H12CQ9C0D7 883 aaKnown RBP14.69□□□□□ -0.06
CUX1-210ENST00000497815 IL1RAPL2Q9NP60 686 aa14.69□□□□□ -0.06
CUX1-210ENST00000497815 SMARCA5O60264 1052 aaPredicted RBP14.68□□□□□ -0.06
CUX1-210ENST00000497815 RAB11FIP3O75154 756 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms