RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 SHANK2Q9UPX8 1470 aa21.92■■□□□ 1.1
COL27A1-207ENST00000494090 GNG11P61952 73 aa21.92■■□□□ 1.1
COL27A1-207ENST00000494090 IFFO1Q0D2I5 559 aa21.92■■□□□ 1.1
COL27A1-207ENST00000494090 NMIQ13287 307 aaPredicted RBP21.92■■□□□ 1.1
COL27A1-207ENST00000494090 ZKSCAN5Q9Y2L8 839 aa21.92■■□□□ 1.1
COL27A1-207ENST00000494090 CHMP4BP1P59074 171 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 MAP2K1Q02750 393 aaPredicted RBP21.91■■□□□ 1.1
COL27A1-207ENST00000494090 USP37Q86T82 979 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 ESR2Q92731 530 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.91■■□□□ 1.12e-7■■□□□ 13.2
COL27A1-207ENST00000494090 LRRC2Q9BYS8 371 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 HS1BP3Q53T59 392 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 LINS1Q8NG48 757 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 HDAC9Q9UKV0 1011 aa21.91■■□□□ 1.1
COL27A1-207ENST00000494090 UHRF1BP1LA0JNW5 1464 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 CTNNA2P26232 953 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 TCERG1LQ5VWI1 586 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 CCDC186Q7Z3E2 898 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 EHBP1Q8NDI1 1231 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 FERMT1Q9BQL6 677 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 PLCD4Q9BRC7 762 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 FLT4P35916 1363 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 TBCAO75347 108 aaKnown RBP21.9■■□□□ 1.1
COL27A1-207ENST00000494090 SKILP12757 684 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 CCDC97Q96F63 343 aaPredicted RBP21.9■■□□□ 1.1
COL27A1-207ENST00000494090 CTAGE1Q96RT6 745 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 N4BP3O15049 544 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 PRIM1P49642 420 aaKnown RBP21.9■■□□□ 1.1
COL27A1-207ENST00000494090 SYCP3Q8IZU3 236 aa21.9■■□□□ 1.1
COL27A1-207ENST00000494090 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.1
COL27A1-207ENST00000494090 SMC1AQ14683 1233 aaKnown RBP21.89■■□□□ 1.1
COL27A1-207ENST00000494090 IFI16Q16666 785 aaKnown RBP21.89■■□□□ 1.1
COL27A1-207ENST00000494090 ATP2B3Q16720 1220 aa21.89■■□□□ 1.1
COL27A1-207ENST00000494090 LMBR1LQ6UX01 489 aa21.89■■□□□ 1.1
COL27A1-207ENST00000494090 ZNF622Q969S3 477 aaKnown RBP eCLIP21.89■■□□□ 1.1
COL27A1-207ENST00000494090 ZNF830Q96NB3 372 aaPredicted RBP21.89■■□□□ 1.1
COL27A1-207ENST00000494090 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.89■■□□□ 1.14e-7■■□□□ 13
COL27A1-207ENST00000494090 COL17A1Q9UMD9 1497 aaPredicted RBP21.89■■□□□ 1.09
COL27A1-207ENST00000494090 GOLGA6L10A0A0M3HER8 536 aa21.89■■□□□ 1.09
COL27A1-207ENST00000494090 USP26Q9BXU7 913 aa21.89■■□□□ 1.09
COL27A1-207ENST00000494090 ZNF219Q9P2Y4 722 aaPredicted RBP21.89■■□□□ 1.09
COL27A1-207ENST00000494090 SOS1Q07889 1333 aaPredicted RBP21.89■■□□□ 1.09
COL27A1-207ENST00000494090 ZNF518AQ6AHZ1 1483 aa21.89■■□□□ 1.09
COL27A1-207ENST00000494090 CTNNBL1Q8WYA6 563 aaPredicted RBP21.89■■□□□ 1.09
COL27A1-207ENST00000494090 AK2P54819 239 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 NPATQ14207 1427 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 STAMBPO95630 424 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 NLRP3Q96P20 1036 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 VAT1LQ9HCJ6 419 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 CCDC174Q6PII3 467 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 TMEM87AQ8NBN3 555 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 SETDB2Q96T68 719 aa21.88■■□□□ 1.09
COL27A1-207ENST00000494090 TUBB4AP04350 444 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 CHMLP26374 656 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 DNA2P51530 1060 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 RTN1Q16799 776 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 CCDC113Q9H0I3 377 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 SEC24BO95487 1268 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 DNAJC25Q9H1X3 360 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 PAG1Q9NWQ8 432 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 SAMM50Q9Y512 469 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 NPC1L1Q9UHC9 1359 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 ABCC1P33527 1531 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 FAM107BQ9H098 131 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 EXOC1Q9NV70 894 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 ZRANB1Q9UGI0 708 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 RAD50Q92878 1312 aa21.87■■□□□ 1.09
COL27A1-207ENST00000494090 TSPY3P0CV98 308 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 TSPY8P0CW00 308 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 SPAG1Q07617 926 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 TRIM47Q96LD4 638 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 TEX14Q8IWB6 1497 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 PHACTR3Q96KR7 559 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 NYXQ9GZU5 481 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 PA2G4Q9UQ80 394 aaKnown RBP21.86■■□□□ 1.09
COL27A1-207ENST00000494090 ZBTB7BO15156 539 aaPredicted RBP21.86■■□□□ 1.09
COL27A1-207ENST00000494090 CREB3L3Q68CJ9 461 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 DDX12PQ92771 950 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 A0A1W2PP64 1363 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 TOM1O60784 492 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 TYRO3Q06418 890 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 MICALCLQ6ZW33 695 aa21.86■■□□□ 1.09
COL27A1-207ENST00000494090 TRAPPC8Q9Y2L5 1435 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 CYP7A1P22680 504 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 RRAGBQ5VZM2 374 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 AOPEPQ8N6M6 819 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 STX8Q9UNK0 236 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 WDR62O43379 1518 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 UHRF1BP1Q6BDS2 1440 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 MAP3K5Q99683 1374 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 MACROD2A1Z1Q3 448 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 PRC1O43663 620 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 CHRNA2Q15822 529 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 PAXIP1Q6ZW49 1069 aaPredicted RBP21.85■■□□□ 1.09
COL27A1-207ENST00000494090 PLVAPQ9BX97 442 aa21.85■■□□□ 1.09
COL27A1-207ENST00000494090 SLC39A6Q13433 755 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 SLC4A4Q9Y6R1 1079 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 IFIT1BQ5T764 474 aaKnown RBP21.84■■□□□ 1.09
COL27A1-207ENST00000494090 CTR9Q6PD62 1173 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 RUFY3Q7L099 469 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms