RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 DUOX1Q9NRD9 1551 aa18.43■□□□□ 0.54
COL9A3-209ENST00000469852 TAF7LQ5H9L4 462 aa18.43■□□□□ 0.54
COL9A3-209ENST00000469852 RPAP2Q8IXW5 612 aaPredicted RBP18.43■□□□□ 0.54
COL9A3-209ENST00000469852 SIL1Q9H173 461 aa18.43■□□□□ 0.54
COL9A3-209ENST00000469852 LDHAL6AQ6ZMR3 332 aa18.42■□□□□ 0.54
COL9A3-209ENST00000469852 SP8Q8IXZ3 490 aa18.42■□□□□ 0.54
COL9A3-209ENST00000469852 MPHOSPH8Q99549 860 aa18.42■□□□□ 0.54
COL9A3-209ENST00000469852 COPRSQ9NQ92 184 aa18.42■□□□□ 0.54
COL9A3-209ENST00000469852 MINPP1Q9UNW1 487 aa18.42■□□□□ 0.54
COL9A3-209ENST00000469852 WTIPA6NIX2 430 aaPredicted RBP18.41■□□□□ 0.54
COL9A3-209ENST00000469852 GPSM2P81274 684 aa18.41■□□□□ 0.54
COL9A3-209ENST00000469852 ATG9AQ7Z3C6 839 aa18.41■□□□□ 0.54
COL9A3-209ENST00000469852 CHRNDQ07001 517 aa18.4■□□□□ 0.54
COL9A3-209ENST00000469852 TMC4Q7Z404 712 aa18.4■□□□□ 0.54
COL9A3-209ENST00000469852 HELBQ8NG08 1087 aaPredicted RBP18.4■□□□□ 0.54
COL9A3-209ENST00000469852 CNNM1Q9NRU3 951 aa18.4■□□□□ 0.54
COL9A3-209ENST00000469852 RIPOR2Q9Y4F9 1068 aa18.4■□□□□ 0.54
COL9A3-209ENST00000469852 SNAP23O00161 211 aa18.39■□□□□ 0.53
COL9A3-209ENST00000469852 EYA2O00167 538 aa18.39■□□□□ 0.53
COL9A3-209ENST00000469852 NFKBIEO00221 500 aa18.39■□□□□ 0.53
COL9A3-209ENST00000469852 CCDC93Q567U6 631 aa18.39■□□□□ 0.53
COL9A3-209ENST00000469852 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.39■□□□□ 0.53
COL9A3-209ENST00000469852 TAF5LO75529 589 aa18.38■□□□□ 0.53
COL9A3-209ENST00000469852 RASSF7Q02833 373 aa18.38■□□□□ 0.53
COL9A3-209ENST00000469852 EXOC6BQ9Y2D4 811 aa18.38■□□□□ 0.53
COL9A3-209ENST00000469852 PRELPP51888 382 aa18.37■□□□□ 0.53
COL9A3-209ENST00000469852 AAMPQ13685 434 aa18.37■□□□□ 0.53
COL9A3-209ENST00000469852 VGLL2Q8N8G2 317 aa18.37■□□□□ 0.53
COL9A3-209ENST00000469852 GPR101Q96P66 508 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-209ENST00000469852 NSFL1CQ9UNZ2 370 aaKnown RBP18.37■□□□□ 0.53
COL9A3-209ENST00000469852 NOP58Q9Y2X3 529 aaKnown RBP18.37■□□□□ 0.53
COL9A3-209ENST00000469852 SURF6O75683 361 aaKnown RBP18.36■□□□□ 0.53
COL9A3-209ENST00000469852 CIAO1O76071 339 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 CC2D2BQ6DHV5 1058 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 ARHGAP27Q6ZUM4 889 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 MPNDQ8N594 471 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 PODXL2Q9NZ53 605 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 ANKIB1Q9P2G1 1089 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 POLLQ9UGP5 575 aa18.36■□□□□ 0.53
COL9A3-209ENST00000469852 CCDC88AQ3V6T2 1871 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 XDHP47989 1333 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 HMMRO75330 724 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 SASH1O94885 1247 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 METTL24Q5JXM2 366 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 SOGA3Q5TF21 947 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 DPP8Q6V1X1 898 aaPredicted RBP18.35■□□□□ 0.53
COL9A3-209ENST00000469852 FBXO3Q9UK99 471 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 SBF1O95248 1867 aa18.35■□□□□ 0.53
COL9A3-209ENST00000469852 COL4A5P29400 1685 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 MROH5Q6ZUA9 1318 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 IGHDP01880 384 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 NEFLP07196 543 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 KLRK1P26718 216 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 IL15P40933 162 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-209ENST00000469852 FKBP4Q02790 459 aaKnown RBP eCLIP18.34■□□□□ 0.53
COL9A3-209ENST00000469852 TFCP2Q12800 502 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 RTKN2Q8IZC4 609 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 TBC1D16Q8TBP0 767 aa18.34■□□□□ 0.53
COL9A3-209ENST00000469852 RTFDC1Q9BY42 306 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-209ENST00000469852 UFL1O94874 794 aa18.33■□□□□ 0.52
COL9A3-209ENST00000469852 G3BP1Q13283 466 aaKnown RBP eCLIP18.33■□□□□ 0.52
COL9A3-209ENST00000469852 PSMD1Q99460 953 aa18.33■□□□□ 0.52
COL9A3-209ENST00000469852 ANKRD2Q9GZV1 360 aa18.33■□□□□ 0.52
COL9A3-209ENST00000469852 TMX4Q9H1E5 349 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-209ENST00000469852 TAOK3Q9H2K8 898 aa18.33■□□□□ 0.52
COL9A3-209ENST00000469852 ZNF277Q9NRM2 450 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-209ENST00000469852 IRS2Q9Y4H2 1338 aa18.32■□□□□ 0.52
COL9A3-209ENST00000469852 APBB1O00213 710 aa18.32■□□□□ 0.52
COL9A3-209ENST00000469852 PDE8BO95263 885 aa18.32■□□□□ 0.52
COL9A3-209ENST00000469852 HDAC1Q13547 482 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-209ENST00000469852 DCTPP1Q9H773 170 aa18.32■□□□□ 0.52
COL9A3-209ENST00000469852 GGA1Q9UJY5 639 aa18.32■□□□□ 0.52
COL9A3-209ENST00000469852 ZNF804BA4D1E1 1349 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 LTBP3Q9NS15 1303 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 C6orf229H3BNL8 230 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 ATP2B4P23634 1241 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 OS9Q13438 667 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-209ENST00000469852 TXNRD3Q86VQ6 643 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 CEP126Q9P2H0 1117 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 ARAP2Q8WZ64 1704 aa18.31■□□□□ 0.52
COL9A3-209ENST00000469852 FGFR2P21802 821 aa18.3■□□□□ 0.52
COL9A3-209ENST00000469852 AOC3Q16853 763 aa18.3■□□□□ 0.52
COL9A3-209ENST00000469852 GRIPAP1Q4V328 841 aa18.3■□□□□ 0.52
COL9A3-209ENST00000469852 LEMD3Q9Y2U8 911 aa18.3■□□□□ 0.52
COL9A3-209ENST00000469852 ZNF609O15014 1411 aa18.3■□□□□ 0.52
COL9A3-209ENST00000469852 RIMBP2O15034 1052 aa18.29■□□□□ 0.52
COL9A3-209ENST00000469852 RHPN1Q8TCX5 695 aa18.29■□□□□ 0.52
COL9A3-209ENST00000469852 DICER1Q9UPY3 1922 aaKnown RBP18.29■□□□□ 0.52
COL9A3-209ENST00000469852 CEP350Q5VT06 3117 aa18.28■□□□□ 0.52
COL9A3-209ENST00000469852 SMARCA5O60264 1052 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-209ENST00000469852 IARSP41252 1262 aaKnown RBP18.28■□□□□ 0.52
COL9A3-209ENST00000469852 KCNJ4P48050 445 aa18.28■□□□□ 0.52
COL9A3-209ENST00000469852 PUM3Q15397 648 aaKnown RBP18.28■□□□□ 0.52
COL9A3-209ENST00000469852 GPBP1L1Q9HC44 474 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-209ENST00000469852 IL1RAPL2Q9NP60 686 aa18.28■□□□□ 0.52
COL9A3-209ENST00000469852 TIAM2Q8IVF5 1701 aa18.28■□□□□ 0.52
COL9A3-209ENST00000469852 MED23Q9ULK4 1368 aa18.28■□□□□ 0.52
COL9A3-209ENST00000469852 PPIP5K2O43314 1243 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 ADORA1P30542 326 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 TIMM10P62072 90 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms