RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.9	□□□□□ -0.34
MRPL55-223	ENST00000459783	ZNF541	Q9H0D2	1346 aa		12.89	□□□□□ -0.35
MRPL55-223	ENST00000459783	ZBTB7B	O15156	539 aa	Predicted RBP	12.89	□□□□□ -0.35
MRPL55-223	ENST00000459783	ITPRIP	Q8IWB1	547 aa		12.89	□□□□□ -0.35
MRPL55-223	ENST00000459783	FTSJ3	Q8IY81	847 aa	Known RBP	12.89	□□□□□ -0.35
MRPL55-223	ENST00000459783	CCDC88A	Q3V6T2	1871 aa		12.89	□□□□□ -0.35
MRPL55-223	ENST00000459783	CEP350	Q5VT06	3117 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	GNAI3	P08754	354 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	KLRK1	P26718	216 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	IGHMBP2	P38935	993 aa	Known RBP	12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	CHRND	Q07001	517 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	KIAA2012	Q0VF49	1180 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	GRIPAP1	Q4V328	841 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	LRRC24	Q50LG9	513 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	HELB	Q8NG08	1087 aa	Predicted RBP	12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	C1orf115	Q9H7X2	142 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	COG6	Q9Y2V7	657 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	XDH	P47989	1333 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783	IRS2	Q9Y4H2	1338 aa		12.88	□□□□□ -0.35
MRPL55-223	ENST00000459783		A0A1B0GUL6	1792 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	FZD9	O00144	591 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	PPIP5K2	O43314	1243 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	TAF5L	O75529	589 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	UFL1	O94874	794 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	PTPN12	Q05209	780 aa	Known RBP	12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	MTX1	Q13505	466 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	CCDC57	Q2TAC2	916 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	TXNRD3	Q86VQ6	643 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	ZNF526	Q8TF50	670 aa	Predicted RBP	12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	RIPOR2	Q9Y4F9	1068 aa		12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	DICER1	Q9UPY3	1922 aa	Known RBP	12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.87	□□□□□ -0.35
MRPL55-223	ENST00000459783	PNMA6E	A0A0J9YXQ4	647 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	YDJC	A8MPS7	323 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	C6orf229	H3BNL8	230 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	RIMBP2	O15034	1052 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	MVP	Q14764	893 aa	Known RBP	12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	LDHAL6A	Q6ZMR3	332 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	LARGE2	Q8N3Y3	721 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	MPHOSPH8	Q99549	860 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	ANKIB1	Q9P2G1	1089 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	GGA1	Q9UJY5	639 aa		12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	PA2G4	Q9UQ80	394 aa	Known RBP	12.86	□□□□□ -0.35
MRPL55-223	ENST00000459783	POTEC	B2RU33	542 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	DDN	O94850	711 aa	Predicted RBP	12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	GNAI2	P04899	355 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	RRP1	P56182	461 aa	Known RBP	12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	ATG9A	Q7Z3C6	839 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	VGLL2	Q8N8G2	317 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	SUPT20H	Q8NEM7	779 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	TMX4	Q9H1E5	349 aa	Predicted RBP	12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	NMRK2	Q9NPI5	230 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	KCNQ5	Q9NR82	932 aa		12.85	□□□□□ -0.35
MRPL55-223	ENST00000459783	GLTPD2	A6NH11	291 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	ATP2B4	P23634	1241 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	PDE3A	Q14432	1141 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	DOK7	Q18PE1	504 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	WASHC4	Q2M389	1173 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	TAF7L	Q5H9L4	462 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	VPS33B	Q9H267	617 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	DBNDD1	Q9H9R9	158 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	CNNM1	Q9NRU3	951 aa		12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.84	□□□□□ -0.35
MRPL55-223	ENST00000459783	MED23	Q9ULK4	1368 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	EYA2	O00167	538 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	CXCL9	Q07325	125 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	NIM1K	Q8IY84	436 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	ANKRD2	Q9GZV1	360 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	SIL1	Q9H173	461 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	COPRS	Q9NQ92	184 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	ZBTB40	Q9NUA8	1239 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	ZNF804B	A4D1E1	1349 aa		12.83	□□□□□ -0.36
MRPL55-223	ENST00000459783	KIF3C	O14782	793 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	SRGAP3	O43295	1099 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	ECE2	O60344	883 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	POLA2	Q14181	598 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	CEP85	Q6P2H3	762 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	JDP2	Q8WYK2	163 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	ZNRF3	Q9ULT6	936 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	LEMD3	Q9Y2U8	911 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	WDR90	Q96KV7	1748 aa		12.82	□□□□□ -0.36
MRPL55-223	ENST00000459783	RAD17	O75943	681 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	MS4A1	P11836	297 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	ATP8B2	P98198	1209 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	C15orf52	Q6ZUT6	534 aa	Known RBP	12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	SIRT2	Q8IXJ6	389 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	SSH3	Q8TE77	659 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	EYA3	Q99504	573 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	DDX19B	Q9UMR2	479 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	SCN9A	Q15858	1988 aa		12.81	□□□□□ -0.36
MRPL55-223	ENST00000459783	CIAO1	O76071	339 aa		12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	FGFR2	P21802	821 aa		12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	METTL24	Q5JXM2	366 aa		12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	RRAGC	Q9HB90	399 aa		12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	HDAC5	Q9UQL6	1122 aa		12.8	□□□□□ -0.36
MRPL55-223	ENST00000459783	ZNF646	O15015	1829 aa	Predicted RBP	12.8	□□□□□ -0.36

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