RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PRDM10Q9NQV6 1147 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 PODXL2Q9NZ53 605 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 ANKIB1Q9P2G1 1089 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 CNOT7Q9UIV1 285 aaKnown RBP9.08□□□□□ -0.96
VPS41-208ENST00000448833 LTBP1Q14766 1721 aa9.08□□□□□ -0.96
VPS41-208ENST00000448833 RAD17O75943 681 aa9.07□□□□□ -0.96
VPS41-208ENST00000448833 RTL5Q5HYW3 569 aaPredicted RBP9.07□□□□□ -0.96
VPS41-208ENST00000448833 ANKRD18AQ8IVF6 992 aa9.07□□□□□ -0.96
VPS41-208ENST00000448833 WWC1Q8IX03 1113 aa9.07□□□□□ -0.96
VPS41-208ENST00000448833 C8orf58Q8NAV2 365 aa9.07□□□□□ -0.96
VPS41-208ENST00000448833 CELF1Q92879 486 aaKnown RBP9.07□□□□□ -0.96
VPS41-208ENST00000448833 HHIPL1Q96JK4 782 aa9.07□□□□□ -0.96
VPS41-208ENST00000448833 CDC5LQ99459 802 aaKnown RBP9.07□□□□□ -0.96
VPS41-208ENST00000448833 WDR33Q9C0J8 1336 aaKnown RBP9.06□□□□□ -0.96
VPS41-208ENST00000448833 MAP2K2P36507 400 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 MMP14P50281 582 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 GPSM2P81274 684 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 TWISTNBQ3B726 338 aaPredicted RBP9.06□□□□□ -0.96
VPS41-208ENST00000448833 WDR63Q8IWG1 891 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 TBC1D16Q8TBP0 767 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 WBP1LQ9NX94 342 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 GGA1Q9UJY5 639 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 MAP3K2Q9Y2U5 619 aa9.06□□□□□ -0.96
VPS41-208ENST00000448833 PSME4Q14997 1843 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 PI4KAP2A4QPH2 592 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 RIMBP2O15034 1052 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 CA12O43570 354 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 ECE2O60344 883 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 ATP2B4P23634 1241 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 PAXIP1Q6ZW49 1069 aaPredicted RBP9.05□□□□□ -0.96
VPS41-208ENST00000448833 MICALL2Q8IY33 904 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 PI4KAP1Q8N8J0 262 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 DCPSQ96C86 337 aaKnown RBP9.05□□□□□ -0.96
VPS41-208ENST00000448833 CAPNS2Q96L46 248 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 MYH16Q9H6N6 1097 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 MRS2Q9HD23 443 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 POLLQ9UGP5 575 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 TLL2Q9Y6L7 1015 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 XDHP47989 1333 aa9.05□□□□□ -0.96
VPS41-208ENST00000448833 DUOX1Q9NRD9 1551 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 ZNF316A6NFI3 1004 aaPredicted RBP9.04□□□□□ -0.96
VPS41-208ENST00000448833 YDJCA8MPS7 323 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 PSMD14O00487 310 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 FOXN1O15353 648 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 UFL1O94874 794 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 CELF2O95319 508 aaKnown RBP9.04□□□□□ -0.96
VPS41-208ENST00000448833 VIL1P09327 827 aaKnown RBP9.04□□□□□ -0.96
VPS41-208ENST00000448833 CST9Q5W186 159 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 PODNQ7Z5L7 613 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 AGBL3Q8NEM8 1001 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 GPR101Q96P66 508 aaPredicted RBP9.04□□□□□ -0.96
VPS41-208ENST00000448833 DBNDD1Q9H9R9 158 aa9.04□□□□□ -0.96
VPS41-208ENST00000448833 BSDC1Q9NW68 430 aaPredicted RBP9.04□□□□□ -0.96
VPS41-208ENST00000448833 RTL9Q8NET4 1388 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 CTSWP56202 376 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 MKRN4PQ13434 485 aaPredicted RBP9.03□□□□□ -0.96
VPS41-208ENST00000448833 SAPCD2Q86UD0 394 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 TSPYL6Q8N831 410 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 TTLL11Q8NHH1 800 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 TSR2Q969E8 191 aaKnown RBP9.03□□□□□ -0.96
VPS41-208ENST00000448833 ZNF428Q96B54 188 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 SEC31BQ9NQW1 1179 aa9.03□□□□□ -0.96
VPS41-208ENST00000448833 AKAP11Q9UKA4 1901 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 NEURL1BA8MQ27 555 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 H7C1W4 665 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 TRAF5O00463 557 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 IGHMBP2P38935 993 aaKnown RBP9.02□□□□□ -0.97
VPS41-208ENST00000448833 HIRAP54198 1017 aaPredicted RBP9.02□□□□□ -0.97
VPS41-208ENST00000448833 FKBP5Q13451 457 aaPredicted RBP9.02□□□□□ -0.97
VPS41-208ENST00000448833 DOK7Q18PE1 504 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 KRT26Q7Z3Y9 468 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 SULF1Q8IWU6 871 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 OGFOD1Q8N543 542 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 C2orf69Q8N8R5 385 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 LINS1Q8NG48 757 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 CCDC102AQ96A19 550 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 MPHOSPH8Q99549 860 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 GLIS2Q9BZE0 524 aaPredicted RBP9.02□□□□□ -0.97
VPS41-208ENST00000448833 ANKRD2Q9GZV1 360 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 LEMD3Q9Y2U8 911 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 ZBTB12Q9Y330 459 aaPredicted RBP9.02□□□□□ -0.97
VPS41-208ENST00000448833 SPEF2Q9C093 1822 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 ZNF609O15014 1411 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 MYO3BQ8WXR4 1341 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 THSD7BQ9C0I4 1608 aa9.02□□□□□ -0.97
VPS41-208ENST00000448833 SCN9AQ15858 1988 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 USP17L3A6NCW0 530 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 USP17L4A6NCW7 530 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 IGKV5-2P06315 115 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 USP17L8P0C7I0 530 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 LBX1P52954 281 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 BRPF1P55201 1214 aaPredicted RBP9.01□□□□□ -0.97
VPS41-208ENST00000448833 FLIIQ13045 1269 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 NOGQ13253 232 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 GCKRQ14397 625 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 TBC1D10BQ4KMP7 808 aaPredicted RBP9.01□□□□□ -0.97
VPS41-208ENST00000448833 CYP4F22Q6NT55 531 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 RSBN1LQ6PCB5 846 aaPredicted RBP9.01□□□□□ -0.97
VPS41-208ENST00000448833 USP17L1Q7RTZ2 530 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 SAMD7Q7Z3H4 446 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms