RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PRSS47A8MTI9 375 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 SQSTM1Q13501 440 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 UBXN2BQ14CS0 331 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 ATXN7L3Q14CW9 347 aaPredicted RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 WBP2NLQ6ICG8 309 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 NDUFAF7Q7L592 441 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 NAXDQ8IW45 347 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 CLEC1AQ8NC01 280 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 C4orf45Q96LM5 186 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 INTS14Q96SY0 518 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 PBX4Q9BYU1 374 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 PRTFDC1Q9NRG1 225 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 OBP2AQ9NY56 170 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 DOCK8Q8NF50 2099 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 D6RAR5 112 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 CSF2RBP32927 897 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 RAB11BQ15907 218 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 KLHL26Q53HC5 615 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ELP2Q6IA86 826 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ASPHD2Q6ICH7 369 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 OR10K2Q6IF99 312 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 LRFN4Q6PJG9 635 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 OOSP2Q86WS3 158 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 PRR22Q8IZ63 422 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 GABRG1Q8N1C3 465 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 GALNT16Q8N428 558 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ZNF321PQ8N8H1 164 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ZNF563Q8TA94 476 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 MCHR2Q969V1 340 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ELSPBP1Q96BH3 223 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 MRPS24Q96EL2 167 aaKnown RBP11.94□□□□□ -0.5
CLN3-210ENST00000563874 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.94□□□□□ -0.5
CLN3-210ENST00000563874 FARSAQ9Y285 508 aaKnown RBP11.94□□□□□ -0.5
CLN3-210ENST00000563874 TRAV14DV4A0A0A6YYC5 116 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 CCSO14618 274 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 WISP1O95388 367 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 WNT11O96014 354 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 PNPP00491 289 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 POU2F2P09086 479 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 OR4E1P0C645 316 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ASAH2BP0C7U1 165 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 RNH1P13489 461 aaKnown RBP11.94□□□□□ -0.5
CLN3-210ENST00000563874 MPGP29372 298 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 CALCRP30988 508 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 DEFA5Q01523 94 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 Q6ZSR6 202 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 MDGA2Q7Z553 956 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 ZNF546Q86UE3 836 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 TAAR8Q969N4 342 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 DCBLD2Q96PD2 775 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 WDR13Q9H1Z4 485 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 LDAHQ9H6V9 325 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 CGGBP1Q9UFW8 167 aaPredicted RBP11.94□□□□□ -0.5
CLN3-210ENST00000563874 SLC6A5Q9Y345 797 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 CLDN16Q9Y5I7 305 aa11.94□□□□□ -0.5
CLN3-210ENST00000563874 TDRD6O60522 2096 aaKnown RBP11.93□□□□□ -0.5
CLN3-210ENST00000563874 ALOX12BO75342 701 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 HPP00738 406 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 TACR3P29371 465 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 CBX5P45973 191 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 PSMD4P55036 377 aaKnown RBP11.93□□□□□ -0.5
CLN3-210ENST00000563874 SCGB2B2Q4G0G5 96 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 LY6G6FQ5SQ64 297 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 OR10K1Q8NGX5 313 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 SLC25A28Q96A46 364 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 SEC22AQ96IW7 307 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 SLC19A3Q9BZV2 496 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 TMEM185BQ9H7F4 350 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 MRTO4Q9UKD2 239 aaKnown RBP11.93□□□□□ -0.5
CLN3-210ENST00000563874 LAMA1P25391 3075 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 TMEM82A0PJX8 343 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 C5orf67F2Z3F1 127 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 CDC40O60508 579 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLN3-210ENST00000563874 RAB3DO95716 219 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 RENP00797 406 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 AMY2AP04746 511 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 HNRNPA2B1P22626 353 aaKnown RBP11.93□□□□□ -0.5
CLN3-210ENST00000563874 TPMTP51580 245 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 NR0B2Q15466 257 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 BEST3Q8N1M1 668 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 OR13H1Q8NG92 308 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 OR1J4Q8NGS1 313 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 OR1J2Q8NGS2 313 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 SLC25A36Q96CQ1 311 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 NARS2Q96I59 477 aaKnown RBP11.93□□□□□ -0.5
CLN3-210ENST00000563874 MNTQ99583 582 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 SLC38A3Q99624 504 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 RTN4RQ9BZR6 473 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 HRH3Q9Y5N1 445 aa11.93□□□□□ -0.5
CLN3-210ENST00000563874 LOC100289279A0A1B0GTE1 492 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 DCDC2BA2VCK2 349 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 TMEM127O75204 238 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 SPARCP09486 303 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 PNMTP11086 282 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 ZNF28P17035 718 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 PPM1FP49593 454 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 SKP2Q13309 424 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 ETFDHQ16134 617 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 NKPD1Q17RQ9 610 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 MANEAQ5SRI9 462 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms