RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 BCL2A1Q16548 175 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 MOGQ16653 247 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 MEP1AQ16819 746 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 RGS21Q2M5E4 152 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 CTU2Q2VPK5 515 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 RFX4Q33E94 735 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 KRTAP19-4Q3LI73 84 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 FNDC7Q5VTL7 733 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TMEM236Q5W0B7 351 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TTC23Q5W5X9 447 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TMEM81Q6P7N7 255 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 DEGS2Q6QHC5 323 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 KIRREL2Q6UWL6 708 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ZNF730Q6ZMV8 503 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 WDR88Q6ZMY6 472 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ZNF517Q6ZMY9 492 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 MARCH3Q86UD3 253 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 RANBP3LQ86VV4 465 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 APLFQ8IW19 511 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 NRMQ8IXM6 262 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ZNF786Q8N393 782 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 CADM2Q8N3J6 435 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 IQCF1Q8N6M8 205 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TMEM116Q8NCL8 245 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SETD9Q8NE22 299 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 OR4K5Q8NGD3 323 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 OR52M1Q8NGK5 317 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 AKR7LQ8NHP1 331 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 WDR36Q8NI36 951 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 CNIH3Q8TBE1 160 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 PIGXQ8TBF5 258 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TEX47Q8TBZ9 253 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TMEM255BQ8WV15 326 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 DNAJA4Q8WW22 397 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 CAPSLQ8WWF8 208 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SLC38A4Q969I6 547 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SH3YL1Q96HL8 342 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 KLHL15Q96M94 604 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 LRFN5Q96NI6 719 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 RDH12Q96NR8 316 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 MUS81Q96NY9 551 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 GPA33Q99795 319 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TPPP3Q9BW30 176 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 HDHD5Q9BXW7 423 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 GPR87Q9BY21 358 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 DEFB126Q9BYW3 111 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 RTN4RQ9BZR6 473 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 UCK2Q9BZX2 261 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SPRY4Q9C004 299 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SEMA4CQ9C0C4 833 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ING2Q9H160 280 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 DSN1Q9H410 356 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ARMC7Q9H6L4 198 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ZBTB20Q9HC78 741 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 GALNT9Q9HCQ5 603 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 PNPLA3Q9NST1 481 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SELENONQ9NZV5 590 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 CNIH4Q9P003 139 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 HSPB7Q9UBY9 170 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TESQ9UGI8 421 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 NXT1Q9UKK6 140 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 PADI1Q9ULC6 663 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SLC7A7Q9UM01 511 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 POFUT2Q9Y2G5 429 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 GMPPBQ9Y5P6 360 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 DOPEY2Q9Y3R5 2298 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 LOC102723996A0A087X1L8 192 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 IGHV1-45A0A0A0MS14 117 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 A0A0B4J2E0 115 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 KRTAP4-8A0A0G2JLE6 195 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 LOC101059948A0A1B0GTJ6 334 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 A0A1B0GX12 115 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 MAGEA13PA6NCF6 341 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 ARRDC5A6NEK1 342 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 OR6C70A6NIJ9 312 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 TMEM200CA6NKL6 621 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 A8MZ25 164 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 PRR23D1E9PI22 279 aaPredicted RBP3.74□□□□□ -1.81
CD44-226ENST00000527889 E9PQ18 207 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 H3BNH8 94 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 WRBO00258 174 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 SOCS6O14544 535 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 ZNF264O43296 627 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 XPNPEP2O43895 674 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 FADS1O60427 444 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 CDC40O60508 579 aaKnown RBP eCLIP3.74□□□□□ -1.81
CD44-226ENST00000527889 RAD1O60671 282 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 TRIM3O75382 744 aaPredicted RBP3.74□□□□□ -1.81
CD44-226ENST00000527889 OR2J2O76002 312 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 ZFAND5O76080 213 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 TNFAIP8O95379 198 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 IL6RP08887 468 aaPredicted RBP3.74□□□□□ -1.81
CD44-226ENST00000527889 ROS1P08922 2347 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 RAB40ALP0C0E4 278 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 LINGO3P0C6S8 592 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 PRR23D2P0DMB1 279 aaPredicted RBP3.74□□□□□ -1.81
CD44-226ENST00000527889 IFI30P13284 250 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 CTRB1P17538 263 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 BMP7P18075 431 aa3.74□□□□□ -1.81
CD44-226ENST00000527889 FUT1P19526 365 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms