RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MEX3DQ86XN8 651 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 STPG2Q8N412 459 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 SETD6Q8TBK2 473 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 GPR119Q8TDV5 335 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 SSC4DQ8WTU2 575 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 EDARADDQ8WWZ3 215 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 OTULINQ96BN8 352 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 RCN3Q96D15 328 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 COL21A1Q96P44 957 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 FAM173AQ9BQD7 235 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 IL19Q9UHD0 177 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 WDR45Q9Y484 360 aa7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 HEATR1Q9H583 2144 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-219ENST00000514096 SERTM1A2A2V5 107 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PHOX2AO14813 284 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 IGKV1D-16P01601 117 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PMP2P02689 132 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 IGKV3-11P04433 115 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ALPLP05186 524 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ACP2P11117 423 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 POU3F2P20265 443 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TNFRSF1BP20333 461 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PRPS1L1P21108 318 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 IGFBP5P24593 272 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ACVR2AP27037 513 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 MED22Q15528 200 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TMEM176BQ3YBM2 270 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 AVPI1Q5T686 147 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 GLYATQ6IB77 296 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ALKAL2Q6UX46 152 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 AHSA2Q719I0 299 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TRIM46Q7Z4K8 759 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CBLN2Q8IUK8 224 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF615Q8N8J6 731 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 FNDC9Q8TBE3 224 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CHCHD6Q9BRQ6 235 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 MED28Q9H204 178 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 HIPK2Q9H2X6 1198 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CACYBPQ9HB71 228 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 MYNNQ9NPC7 610 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 AKIP1Q9NQ31 210 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TAS2R3Q9NYW6 316 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 GSKIPQ9P0R6 139 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 SSUH2Q9Y2M2 353 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 HEATR5AQ86XA9 2040 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 A0A075B6Q4 140 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 hCG_1807616A0A1W2PRN6 198 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 C22orf46C9J442 243 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 FABP7O15540 132 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 EMC8O43402 210 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 NME2P1O60361 137 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 GPX5O75715 221 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 HSD3B1P14060 373 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 NME2P22392 152 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 IDH3AP50213 366 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ALDH3A2P51648 485 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 POLR2JP52435 117 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PYDC2Q56P42 97 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ETV3LQ6ZN32 361 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 DOLPP1Q86YN1 238 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 MCEMP1Q8IX19 187 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 STX19Q8N4C7 294 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 UXS1Q8NBZ7 420 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 BBS10Q8TAM1 723 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF671Q8TAW3 534 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 NEK7Q8TDX7 302 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 OIT3Q8WWZ8 545 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC35A4Q96G79 324 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 OR11A1Q9GZK7 315 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ALX4Q9H161 411 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ZCCHC4Q9H5U6 513 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 KLHL13Q9P2N7 655 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC13A4Q9UKG4 626 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 USP22Q9UPT9 525 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 WIF1Q9Y5W5 379 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 EFCAB10A6NFE3 127 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 EFCAB9A8MZ26 197 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 SOCS2O14508 198 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CLEC3BP05452 202 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CD3GP09693 182 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 IL11P20809 199 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PITPNBP48739 271 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 RGS6P49758 472 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PPT1P50897 306 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 RIN1Q13671 783 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 IRF3Q14653 427 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CD226Q15762 336 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF628Q5EBL2 1059 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TMEM17Q86X19 198 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 OR5T2Q8NGG2 359 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 MIB2Q96AX9 1013 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 SGCZQ96LD1 299 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 CCDC115Q96NT0 180 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 OR7D2Q96RA2 312 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 PAK1IP1Q9NWT1 392 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TUBD1Q9UJT1 453 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC5A6Q9Y289 635 aa7.1□□□□□ -1.27
LIMCH1-219ENST00000514096 TEX13DA0A0J9YY54 714 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 H0YAE9 185 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CEACAM4O75871 244 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms