RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 LRRC58Q96CX6 371 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 RCN3Q96D15 328 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZHX1-C8orf76Q96EF9 292 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF385AQ96PM9 386 aaKnown RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF607Q96SK3 696 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 MCHR1Q99705 422 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ECSITQ9BQ95 431 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 HDHD5Q9BXW7 423 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 POTEKPQ9BYX7 375 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 TMEM38AQ9H6F2 299 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ARMC7Q9H6L4 198 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 KAT8Q9H7Z6 458 aaKnown RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 TMEM45AQ9NWC5 275 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF226Q9NYT6 803 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 KLHL9Q9P2J3 617 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 GRHPRQ9UBQ7 328 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 RPS6KB2Q9UBS0 482 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 SEC14L4Q9UDX3 406 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 SLC13A4Q9UKG4 626 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 SPIN1Q9Y657 262 aaPredicted RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 ANKRD17O75179 2603 aaKnown RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 IGKV1D-42A0A075B6H8 117 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 IGKV3D-15A0A087WSY6 115 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 CIB4A0PJX0 185 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CPSF4LA6NMK7 179 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 MS4A18H0YCH9 400 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 FXYD1O00168 92 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 GPR171O14626 319 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CLOCKO15516 846 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 LYPD3O95274 346 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 LGI1O95970 557 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 HPRP00739 348 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 RAF1P04049 648 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 THY1P04216 161 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 COX4I1P13073 169 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 HLA-DOBP13765 273 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 PSMB1P20618 241 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 FKBP2P26885 142 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 GRPRP30550 384 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 PRKAR1BP31321 381 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 OR1E2P47887 323 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 P2RY4P51582 365 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CRYBA2P53672 197 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 RGS8P57771 180 aaPredicted RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 SUMO2P61956 95 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 IRX1P78414 480 aaPredicted RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 ITGADQ13349 1161 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 C1DQ13901 141 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 P2RY6Q15077 328 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TAB1Q15750 504 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 NPTX1Q15818 432 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 ACKR1Q16570 336 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 ZSWIM7Q19AV6 140 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TRMT5Q32P41 509 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 MS4A18Q3C1V0 323 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TSPO2Q5TGU0 170 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CARD17Q5XLA6 110 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 FBXW9Q5XUX1 488 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TMEM65Q6PI78 240 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 DHRS4L2Q6PKH6 230 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CASP12Q6UXS9 341 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 WDR88Q6ZMY6 472 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 Q6ZT83 130 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CREB3L2Q70SY1 520 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 LINGO2Q7L985 606 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 AAED1Q7RTV5 226 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CALHM3Q86XJ0 350 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 MEX3DQ86XN8 651 aaKnown RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 EPHX4Q8IUS5 362 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 WDFY1Q8IWB7 410 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 IZUMO1Q8IYV9 350 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 ZNF433Q8N7K0 673 aaPredicted RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 WDR31Q8NA23 367 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 OR6T1Q8NGN1 323 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 LILRB1Q8NHL6 650 aaPredicted RBP3.96□□□□□ -1.78
NUP54-206ENST00000508465 PIGXQ8TBF5 258 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 SLC26A7Q8TE54 656 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 HSD17B8Q92506 261 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 AKAP1Q92667 903 aaKnown RBP eCLIP3.96□□□□□ -1.78
NUP54-206ENST00000508465 SLC38A4Q969I6 547 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 APH1AQ96BI3 265 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 MUCL1Q96DR8 90 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TXNDC15Q96J42 360 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 ZNF583Q96ND8 569 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TAPBPLQ9BX59 468 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TRIM2Q9C040 744 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CCDC134Q9H6E4 229 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 TMEM27Q9HBJ8 222 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 MED4Q9NPJ6 270 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 SLC7A10Q9NS82 523 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 GID8Q9NWU2 228 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 CMTM6Q9NX76 183 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 SELENONQ9NZV5 590 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 EMC3Q9P0I2 261 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 MDFICQ9P1T7 246 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 UPB1Q9UBR1 384 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 ANGPT4Q9Y264 503 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 FLVCR1Q9Y5Y0 555 aa3.96□□□□□ -1.78
NUP54-206ENST00000508465 GMEB1Q9Y692 573 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms