RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SEMA6CQ9H3T2 930 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 SEC61A2Q9H9S3 476 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 BCO1Q9HAY6 547 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 NPDC1Q9NQX5 325 aaPredicted RBP8.52□□□□□ -1.04
COL28A1-201ENST00000399429 PCOLCE2Q9UKZ9 415 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 GAB2Q9UQC2 676 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 AMDHD2Q9Y303 409 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 KIAA1217Q5T5P2 1943 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 DSPPQ9NZW4 1301 aa8.52□□□□□ -1.04
COL28A1-201ENST00000399429 MEGF11A6BM72 1044 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 TGOLN2O43493 480 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ZFPL1O95159 310 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 AIFM1O95831 613 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 IGHA1P01876 353 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 FAM157BP0CG42 384 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 PRF1P14222 555 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 MUC1P15941 1255 aaPredicted RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 PPP1R1AQ13522 171 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 GUK1Q16774 197 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 HAGHQ16775 308 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 MIDNQ504T8 468 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ALG10Q5BKT4 473 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 CD300LGQ6UXG3 332 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF550Q7Z398 422 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 LYG2Q86SG7 212 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF619Q8N2I2 560 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 MORN4Q8NDC4 146 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 KCNG2Q9UJ96 466 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 RNF215Q9Y6U7 377 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 PAPPAQ13219 1627 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 TNRC6CQ9HCJ0 1690 aaKnown RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 A0A0A6YYC8 382 aaPredicted RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 I3L1I5 382 aaPredicted RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 CTDSPLO15194 276 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ADH1CP00326 375 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 C5AR1P21730 350 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 LIMS1P48059 325 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 DVL1P1P54792 670 aaPredicted RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 SLC25A30Q5SVS4 291 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 DCST2Q5T1A1 773 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 MRM1Q6IN84 353 aaKnown RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 SGPP2Q8IWX5 399 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF461Q8TAF7 563 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 MARCH1Q8TCQ1 289 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 NUDCD2Q8WVJ2 157 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 SOSTQ9BQB4 213 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 C20orf141Q9NUB4 165 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 CLDND1Q9NY35 253 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 KCMF1Q9P0J7 381 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 NOSIPQ9Y314 301 aaKnown RBP8.52□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF337Q9Y3M9 751 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 DMRT1Q9Y5R6 373 aa8.52□□□□□ -1.05
COL28A1-201ENST00000399429 F10P00742 488 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 GLI4P10075 376 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 FXYD4P59646 89 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 COTL1Q14019 142 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 CLEC12BQ2HXU8 276 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 C2orf68Q2NKX9 166 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 KCNK15Q9H427 330 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SDHAF3Q9NRP4 125 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 LY75O60449 1722 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 TRBV5-4A0A0C4DH59 114 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF729A6NN14 1252 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SOX1O00570 391 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 MAN2B1O00754 1011 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 MBTPS2O43462 519 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SOX15O60248 233 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 DNAJB6O75190 326 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 CLN5O75503 358 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 TACR3P29371 465 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 EMP2P54851 167 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 RAB4BP61018 213 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 GPR18Q14330 331 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 EXOSC7Q15024 291 aaKnown RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM35AQ53FP2 167 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 DHRS7BQ6IAN0 325 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 RPUSD3Q6P087 351 aaKnown RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 NPRL2Q8WTW4 380 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 RAB39BQ96DA2 213 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 Q96M85 177 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SRMSQ9H3Y6 488 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 Q9N2J8 555 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 MBD1Q9UIS9 605 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 AUP1Q9Y679 476 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 A0A1B0GWA3 101 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 FAM230AA0A1W2PPH8 454 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF850A8MQ14 1090 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 LDB3O75112 727 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 OR2A4O95047 310 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 H2BFMP0C1H6 154 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 FCGR2CP31995 323 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 PRLHRP49683 370 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SPRYD7Q5W111 196 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 GGNBP1Q5YKI7 109 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 DMKNQ6E0U4 476 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SLC18B1Q6NT16 456 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 THSD4Q6ZMP0 1018 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 ETV3LQ6ZN32 361 aa8.51□□□□□ -1.05
COL28A1-201ENST00000399429 SYS1Q8N2H4 156 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms