RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SPATC1Q76KD6 591 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 HIPK4Q8NE63 616 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 IPCEF1Q8WWN9 437 aaPredicted RBP11.69□□□□□ -0.54
VPS29-201ENST00000360579 MARS2Q96GW9 593 aaKnown RBP11.69□□□□□ -0.54
VPS29-201ENST00000360579 WDR55Q9H6Y2 383 aaPredicted RBP11.69□□□□□ -0.54
VPS29-201ENST00000360579 PATZ1Q9HBE1 687 aaKnown RBP11.69□□□□□ -0.54
VPS29-201ENST00000360579 OR5V1Q9UGF6 321 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 TRIM33Q9UPN9 1127 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 ZNF281Q9Y2X9 895 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 ZSCAN5BA6NJL1 495 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 CENPBD1B2RD01 187 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 TRAPPC2LH3BP13 241 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 M0QZ24 198 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 SERPINB7O75635 380 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 MMP7P09237 267 aaPredicted RBP11.68□□□□□ -0.54
VPS29-201ENST00000360579 SLC6A9P48067 706 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 POLR2JP52435 117 aaKnown RBP11.68□□□□□ -0.54
VPS29-201ENST00000360579 CLRN1P58418 232 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 CDK6Q00534 326 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 THEM4Q5T1C6 240 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 GCNT6Q5T4J0 391 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 HHATQ5VTY9 493 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 NXNQ6DKJ4 435 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 ZNF613Q6PF04 617 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 HDDC2Q7Z4H3 204 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 COMTD1Q86VU5 262 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 GOLGA6L1Q8N7Z2 621 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 OR52E2Q8NGJ4 325 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 NFKBIDQ8NI38 313 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 KLF14Q8TD94 323 aaPredicted RBP11.68□□□□□ -0.54
VPS29-201ENST00000360579 GTF2H4Q92759 462 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 ZNF607Q96SK3 696 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 RSPO3Q9BXY4 272 aaPredicted RBP11.68□□□□□ -0.54
VPS29-201ENST00000360579 MMP27Q9H306 513 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 BEX1Q9HBH7 125 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 NPHS2Q9NP85 383 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 CCNB1IP1Q9NPC3 277 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 SLCO1B3Q9NPD5 702 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 NANSQ9NR45 359 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 SDR39U1Q9NRG7 319 aaPredicted RBP11.68□□□□□ -0.54
VPS29-201ENST00000360579 TAS2R5Q9NYW4 299 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 EGFL7Q9UHF1 273 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 IL20RAQ9UHF4 553 aa11.68□□□□□ -0.54
VPS29-201ENST00000360579 LCE2BO14633 110 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 CHP2O43745 196 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 TPST1O60507 370 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 FMO6PO60774 539 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 HIST1H2ABP04908 130 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 VIMP08670 466 aaKnown RBP11.67□□□□□ -0.54
VPS29-201ENST00000360579 TNFRSF1AP19438 455 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 CPT2P23786 658 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 PCGF2P35227 344 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 MPV17P39210 176 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 GDI2P50395 445 aaKnown RBP11.67□□□□□ -0.54
VPS29-201ENST00000360579 TNFAIP6P98066 277 aaPredicted RBP11.67□□□□□ -0.54
VPS29-201ENST00000360579 BST1Q10588 318 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 MELKQ14680 651 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 ZNF74Q16587 644 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 HIST3H3Q16695 136 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 ESCO2Q56NI9 601 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 PABPC1L2AQ5JQF8 200 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 SPATA46Q5T0L3 261 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 HIST3H2AQ7L7L0 130 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 ZER1Q7Z7L7 766 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 ZNF101Q8IZC7 436 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 PARP8Q8N3A8 854 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 LRRC18Q8N456 261 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 OR4F5Q8NH21 305 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 SLC25A40Q8TBP6 338 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 WFDC12Q8WWY7 111 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 GEMIN6Q8WXD5 167 aaKnown RBP11.67□□□□□ -0.54
VPS29-201ENST00000360579 HIST1H2ACQ93077 130 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 MCHR2Q969V1 340 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 DCLRE1CQ96SD1 692 aaKnown RBP11.67□□□□□ -0.54
VPS29-201ENST00000360579 CCT8L2Q96SF2 557 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 TMEM109Q9BVC6 243 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 OR2J1Q9GZK6 312 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 PAIP1Q9H074 479 aaKnown RBP11.67□□□□□ -0.54
VPS29-201ENST00000360579 SIAEQ9HAT2 523 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 TMEM106BQ9NUM4 274 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 ZNF229Q9UJW7 825 aa11.67□□□□□ -0.54
VPS29-201ENST00000360579 C5orf49A4QMS7 147 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 TIMM23O14925 209 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 TPST2O60704 377 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 CH25HO95992 272 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 PPIBP23284 216 aaKnown RBP11.66□□□□□ -0.54
VPS29-201ENST00000360579 TNFSF4P23510 183 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 WNT5AP41221 380 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 BTG1P62324 171 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 MRPS34P82930 218 aaKnown RBP11.66□□□□□ -0.54
VPS29-201ENST00000360579 PAX8Q06710 450 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 FAM205BPQ63HN1 556 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 BTNL3Q6UXE8 466 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 LRRN1Q6UXK5 716 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 LINC00114Q6XXX2 140 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 LRRC28Q86X40 367 aaPredicted RBP11.66□□□□□ -0.54
VPS29-201ENST00000360579 ARMC8Q8IUR7 673 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 ZNF283Q8N7M2 679 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 POM121L2Q96KW2 1035 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 NANOGQ9H9S0 305 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms