RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 LOC100289279A0A1B0GTE1 492 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 A0A1B0GTH9 108 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 I3L1I5 382 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 GCM2O75603 506 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 GP1BBP13224 206 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 NPBWR1P48145 328 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 DHRS2Q13268 280 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 ELOCQ15369 112 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 DUSP5Q16690 384 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 C2orf76Q3KRA6 126 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 NHLRC3Q5JS37 347 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 LPCAT3Q6P1A2 487 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SULF2Q8IWU5 870 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 OR51T1Q8NGJ9 327 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SECTM1Q8WVN6 248 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SPHK2Q9NRA0 654 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SEMA7AO75326 666 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 KLF8O95600 359 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 PRPS1P60891 318 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 HMGN3Q15651 99 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 RNF151Q2KHN1 245 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 CARD17Q5XLA6 110 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 UQCC3Q6UW78 93 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 MARCH1Q8TCQ1 289 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SLC22A18Q96BI1 424 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 RHOVQ96L33 236 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 CHST6Q9GZX3 395 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SHARPINQ9H0F6 387 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 IL20Q9NYY1 176 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 PCDHGA5Q9Y5G8 931 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SPTBN2O15020 2390 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 BHLHE40O14503 412 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 CDC42EP2O14613 210 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 RECKO95980 971 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 IFNA5P01569 189 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ITGB2P05107 769 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 CA3P07451 260 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 CALCBP10092 127 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 CASRP41180 1078 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OR2T2Q6IF00 324 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OR2A2Q6IF42 318 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 RSPO2Q6UXX9 243 aaPredicted RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 MDGA2Q7Z553 956 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 LDLRAD3Q86YD5 345 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 RNF113BQ8IZP6 322 aaKnown RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 SEMA6DQ8NFY4 1073 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 KIRREL1Q96J84 757 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 STARD5Q9NSY2 213 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OR5V1Q9UGF6 321 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 KCNMB2Q9Y691 235 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 FOCADQ5VW36 1801 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 TMEM269A0A1B0GVZ9 245 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 FAM230AA0A1W2PPH8 454 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF587BE7ETH6 402 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ADAM10O14672 748 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 PPIAP62937 165 aaKnown RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ACSM1Q08AH1 577 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 KLF9Q13886 244 aaPredicted RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 DMRTC1Q5HYR2 192 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 MCATQ8IVS2 390 aaKnown RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OR6K3Q8NGY3 331 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 SMARCD2Q92925 531 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 NIPSNAP3BQ9BS92 247 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 JAM3Q9BX67 310 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 TM7SF3Q9NS93 570 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 C20orf141Q9NUB4 165 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 C2orf42Q9NWW7 574 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 SDCBPO00560 298 aaPredicted RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ABCD4O14678 606 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 CYB5BO43169 146 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ITGB8P26012 769 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 TACR3P29371 465 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF239Q16600 458 aaKnown RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 HFEQ30201 348 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 PRR22Q8IZ63 422 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 SUMF1Q8NBK3 374 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OR11G2Q8NGC1 345 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OR9K2Q8NGE7 335 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 GLYATL2Q8WU03 294 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 OVCA2Q8WZ82 227 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 SGK3Q96BR1 496 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 SLC35A4Q96G79 324 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 VSX1Q9NZR4 365 aaPredicted RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 TIMM8BQ9Y5J9 83 aaPredicted RBP12.12□□□□□ -0.47
COL2A1-201ENST00000337299 LAMB2P55268 1798 aa12.12□□□□□ -0.47
COL2A1-201ENST00000337299 ADAMTSL1Q8N6G6 1762 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 PRAMEF25A6NGN4 478 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 PLPP2O43688 288 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 ARRB1P49407 418 aaPredicted RBP12.11□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF704Q6ZNC4 412 aaPredicted RBP12.11□□□□□ -0.47
COL2A1-201ENST00000337299 PARS2Q7L3T8 475 aaKnown RBP12.11□□□□□ -0.47
COL2A1-201ENST00000337299 CPEB2Q7Z5Q1 589 aaKnown RBP12.11□□□□□ -0.47
COL2A1-201ENST00000337299 PEX11GQ96HA9 241 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 SPACA5Q96QH8 159 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 CLCC1Q96S66 551 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 FOXJ3Q9UPW0 622 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 A0A087X0M5 115 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 A0A1B0GX30 115 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 A0A1W2PR48 441 aa12.11□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF726A6NNF4 738 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms