RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 OR51A7Q8NH64 312 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 FGFBP3Q8TAT2 258 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 LRRC37BQ96QE4 947 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 DOK1Q99704 481 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 ANKRD19PQ9H560 264 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 NMNAT1Q9HAN9 279 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-203ENST00000593582 SMURF2Q9HAU4 748 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 MYOZ1Q9NP98 299 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-203ENST00000593582 SAMD4AQ9UPU9 718 aaKnown RBP13.19□□□□□ -0.3
TRIM28-203ENST00000593582 ARL2BPQ9Y2Y0 163 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 FAM32AQ9Y421 112 aaKnown RBP13.19□□□□□ -0.3
TRIM28-203ENST00000593582 ENPP4Q9Y6X5 453 aa13.19□□□□□ -0.3
TRIM28-203ENST00000593582 TRAV27A0A087WT01 109 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 A0A087WUU8 490 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 CD5LO43866 347 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 SLC2A10O95528 541 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 PTHP01270 115 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 GLRXP35754 106 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 PDLIM4P50479 330 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 ZNF133P52736 654 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 CTXN1P60606 82 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 RPL27P61353 136 aaKnown RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 RPS23P62266 143 aaKnown RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 PLP2Q04941 152 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 LOXL1Q08397 574 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 FAM205BPQ63HN1 556 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 MEX3DQ86XN8 651 aaKnown RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 LRRC18Q8N456 261 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 RNF148Q8N7C7 305 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 RBM15BQ8NDT2 890 aaKnown RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 SLC30A7Q8NEW0 376 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 HDAC2Q92769 488 aaKnown RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 TNFRSF13CQ96RJ3 184 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 PIMREGQ9BSJ6 248 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 KCNN2Q9H2S1 579 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 C1orf198Q9H425 327 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 SIAEQ9HAT2 523 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 DYNLRB1Q9NP97 96 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 DCAF13Q9NV06 445 aaKnown RBP13.18□□□□□ -0.3
TRIM28-203ENST00000593582 SLC7A8Q9UHI5 535 aa13.18□□□□□ -0.3
TRIM28-203ENST00000593582 A0A096LNT2 108 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 LOC390937A0A1W2PQ73 354 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 A0A1W2PRQ8 180 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 TMEM129A0AVI4 362 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 SH3PXD2BA1X283 911 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 A6NIZ1 184 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 NDUFS8O00217 210 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 TLX2O43763 284 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-203ENST00000593582 GPRIN2O60269 458 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 DCTN3O75935 186 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 IGHMP01871 453 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 H1F0P07305 194 aaKnown RBP13.17□□□□□ -0.3
TRIM28-203ENST00000593582 RHCEP18577 417 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 GPR4P46093 362 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 EVX1P49640 407 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 RAP1BP61224 184 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 RAP1AP62834 184 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 MRPS34P82930 218 aaKnown RBP13.17□□□□□ -0.3
TRIM28-203ENST00000593582 DGCR6Q14129 220 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 CARTPTQ16568 116 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 THEM4Q5T1C6 240 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 TBPL2Q6SJ96 375 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 TMPRSS11FQ6ZWK6 438 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 PIGWQ7Z7B1 504 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 IGFN1Q86VF2 1251 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 OR13C2Q8NGS9 318 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 FNDC8Q8TC99 324 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 NSMAFQ92636 917 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 MRPL24Q96A35 216 aaKnown RBP13.17□□□□□ -0.3
TRIM28-203ENST00000593582 NMD3Q96D46 503 aaKnown RBP13.17□□□□□ -0.3
TRIM28-203ENST00000593582 RBP7Q96R05 134 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 KCNK17Q96T54 332 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 ALG12Q9BV10 488 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 NDEL1Q9GZM8 345 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 LRMDAQ9H2I8 198 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 GORASP2Q9H8Y8 452 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 NDUFAF4Q9P032 175 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 ZNF346Q9UL40 294 aaKnown RBP13.17□□□□□ -0.3
TRIM28-203ENST00000593582 TMEM5Q9Y2B1 443 aa13.17□□□□□ -0.3
TRIM28-203ENST00000593582 ARFGEF3Q5TH69 2177 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 IQCMA0A1B0GVH7 501 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 SYNGR3O43761 229 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 ADRA2AP08913 450 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 TCN1P20061 433 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 USF1P22415 310 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 CDAP32320 146 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 RPL4P36578 427 aaKnown RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 GUCA1AP43080 201 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 HSF2Q03933 536 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 FMODQ06828 376 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 KRT72Q14CN4 511 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 TBC1D28Q2M2D7 210 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 TMEM249Q2WGJ8 235 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 FGD3Q5JSP0 725 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 SAMD4BQ5PRF9 694 aaKnown RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 TSEN54Q7Z6J9 526 aaKnown RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 PGAM4Q8N0Y7 254 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 ZCCHC24Q8N2G6 241 aaKnown RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 LRRC75AQ8NAA5 344 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 FAM156AQ8NDB6 213 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms