RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TSPO2Q5TGU0 170 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 GPR107Q5VW38 600 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 FAM205BPQ63HN1 556 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 CCDC28AQ8IWP9 274 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 RNF113BQ8IZP6 322 aaKnown RBP7.62□□□□□ -1.19
USP3-208ENST00000558285 FBXL14Q8N1E6 418 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 FAM169BQ8N8A8 192 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 ASCC1Q8N9N2 400 aaKnown RBP7.62□□□□□ -1.19
USP3-208ENST00000558285 OR52N5Q8NH56 324 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 CAPSLQ8WWF8 208 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 AKAP1Q92667 903 aaKnown RBP eCLIP7.62□□□□□ -1.19
USP3-208ENST00000558285 ZNF524Q96C55 264 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 SGTBQ96EQ0 304 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 BOD1Q96IK1 185 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 TMEM204Q9BSN7 226 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 BDH2Q9BUT1 245 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 PTDSS2Q9BVG9 487 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 AMBRA1Q9C0C7 1298 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 ANKRD19PQ9H560 264 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 SLC17A5Q9NRA2 495 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 SLC7A10Q9NS82 523 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 USP22Q9UPT9 525 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 TMEM5Q9Y2B1 443 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 KIAA1549Q9HCM3 1950 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 HEATR5AQ86XA9 2040 aa7.62□□□□□ -1.19
USP3-208ENST00000558285 RPL36A-HNRNPH2H7BZ11 118 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 J3QRK9 145 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 M0R1B8 84 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 PEX14O75381 377 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CH25HO95992 272 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 PTHP01270 115 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 MT-ND1P03886 318 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CD99P14209 185 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 HOXB6P17509 224 aaKnown RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 CD40LGP29965 261 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 RRM2P31350 389 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ARR3P36575 388 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 IFNGR2P38484 337 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CAPZA2P47755 286 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CSNK1A1P48729 337 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ERFP50548 548 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 GZMMP51124 257 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF84P51523 738 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CDH11P55287 796 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 EGR4Q05215 589 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 BSPH1Q075Z2 132 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZP4Q12836 540 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF74Q16587 644 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF544Q6NX49 715 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 TGIF2LYQ8IUE0 185 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 EPHX4Q8IUS5 362 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 C10orf111Q8N326 155 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 TMEM239Q8WW34 195 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF566Q969W8 418 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CEP19Q96LK0 163 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF385AQ96PM9 386 aaKnown RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 ULBP2Q9BZM5 246 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 NEK6Q9HC98 313 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CISD1Q9NZ45 108 aaKnown RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 ENPP5Q9UJA9 477 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 PMF1-BGLAPU3KQ54 211 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 UTP20O75691 2785 aaKnown RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 ANKRD17O75179 2603 aaKnown RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 IGKV1D-42A0A075B6H8 117 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ARPC4-TTLL3A0A0A6YYG9 625 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF99A8MXY4 864 aaPredicted RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 PLPP3O14495 311 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ABCD4O14678 606 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ACOT8O14734 319 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 PTTG1O95997 202 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 IGHG1P01857 330 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 BGLAPP02818 100 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 KRT8P05787 483 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ITGA5P08648 1049 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CD53P19397 219 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 RCVRNP35243 200 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 SLC9A3P48764 834 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 SELENOPP49908 381 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF83P51522 516 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 CLRN1P58418 232 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 FXNQ16595 210 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF672Q499Z4 452 aaPredicted RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF773Q6PK81 442 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 SEZ6L2Q6UXD5 910 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 UNQ6126/PRO20091Q6UXV3 157 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 LINC00114Q6XXX2 140 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 ZNF786Q8N393 782 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 GPR32P1Q8NGA4 272 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 OR4F15Q8NGB8 312 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 OR1K1Q8NGR3 316 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 OR6X1Q8NH79 312 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 SMAP2Q8WU79 429 aaPredicted RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 ALKBH3Q96Q83 286 aaPredicted RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 KATNB1Q9BVA0 655 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 GON7Q9BXV9 100 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 GSX2Q9BZM3 304 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 MUC13Q9H3R2 512 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 C1orf198Q9H425 327 aa7.61□□□□□ -1.19
USP3-208ENST00000558285 RBMX2Q9Y388 322 aaKnown RBP7.61□□□□□ -1.19
USP3-208ENST00000558285 SLC25A15Q9Y619 301 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms