RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TEX12Q9BXU0 123 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 TRIM2Q9C040 744 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 ADAM19Q9H013 955 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 RACGAP1Q9H0H5 632 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 TMEM27Q9HBJ8 222 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 IL20Q9NYY1 176 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 TVP23BQ9NYZ1 205 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 SELENONQ9NZV5 590 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 ICAM5Q9UMF0 924 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 CLEC4AQ9UMR7 237 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 TMEM5Q9Y2B1 443 aa11.05□□□□□ -0.64
SHMT2-230ENST00000557427 A0A0J9YW62 118 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 IRGMA1A4Y4 181 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 C16orf97H3BN30 126 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 M0R082 166 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF264O43296 627 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 CHP2O43745 196 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 PRKYO43930 277 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 AQP8O94778 261 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 CGAP01215 116 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 GKN3PP0CG01 181 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 DBTP11182 482 aaKnown RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF17P17021 662 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 SFTPDP35247 375 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 EIF1P41567 113 aaKnown RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 KIR2DL2P43627 348 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 SLC6A8P48029 635 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 CARD18P57730 90 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF91Q05481 1191 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 PRKCDQ05655 676 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 AQP6Q13520 282 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 TIGD6Q17RP2 521 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 TMEM176BQ3YBM2 270 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 EEF1A1P5Q5VTE0 462 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 HBMQ6B0K9 141 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF620Q6ZNG0 422 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 IL17RELQ6ZVW7 336 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 IQCF1Q8N6M8 205 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 LSMEM1Q8N8F7 131 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 OR8D4Q8NGM9 314 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 OR10D3Q8NH80 312 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 OR2V1Q8NHB1 315 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 TMEM163Q8TC26 289 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 TMEM239Q8WW34 195 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 CNOT9Q92600 299 aaKnown RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 AKAP1Q92667 903 aaKnown RBP eCLIP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF524Q96C55 264 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 TMEM80Q96HE8 168 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 SLC38A2Q96QD8 506 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ESRP2Q9H6T0 727 aaKnown RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 EGLN3Q9H6Z9 239 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 TBC1D23Q9NUY8 699 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 MRPS18AQ9NVS2 196 aaKnown RBP11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ELOVL5Q9NYP7 299 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 DNAJC27Q9NZQ0 273 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 LPAR3Q9UBY5 353 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF175Q9Y473 711 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 CDH10Q9Y6N8 788 aa11.04□□□□□ -0.64
SHMT2-230ENST00000557427 IGHV4-30-2A0A087WSY4 118 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 A0A0B4J2E0 115 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 A0A1B0GX12 115 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SNTNA6NMZ2 147 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 PIP5K1CO60331 668 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 EIF4E2O60573 245 aaKnown RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SYNGR4O95473 234 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 PLGP00747 810 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 CSTAP01040 98 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 PTHP01270 115 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 CRHP06850 196 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 DANCRP0C864 163 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 UBL4AP11441 157 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 CD36P16671 472 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF182P17025 639 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SHC1P29353 583 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 RBM34P42696 430 aaKnown RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 ACAA2P42765 397 aaKnown RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 GPR4P46093 362 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 CTBP2P56545 445 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 FOXF1Q12946 379 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SPCS2Q15005 226 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SNAPC1Q16533 368 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SYT14P1Q58G82 188 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 BEX5Q5H9J7 111 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 PDSS1Q5T2R2 415 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 RPL13AP3Q6NVV1 102 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 LINC00299Q6ZSB3 139 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 TMPRSS11FQ6ZWK6 438 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SLC46A3Q7Z3Q1 461 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF440Q8IYI8 595 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF610Q8N9Z0 462 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 OR5W2Q8NH69 310 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 TRMT61AQ96FX7 289 aaKnown RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 ZNF582Q96NG8 517 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 TSSK6Q9BXA6 273 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 LAT2Q9GZY6 243 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 SHARPINQ9H0F6 387 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 RNF122Q9H9V4 155 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 GDF2Q9UK05 429 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-230ENST00000557427 MED31Q9Y3C7 131 aa11.03□□□□□ -0.64
SHMT2-230ENST00000557427 FREM1Q5H8C1 2179 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms