RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 IL13RA1P78552 427 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TNFRSF9Q07011 255 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NDUFA9Q16795 377 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ATPAF1Q5TC12 328 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LYPLAL1Q5VWZ2 237 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LIPJQ5W064 366 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NCR3LG1Q68D85 454 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TXNDC8Q6A555 127 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 DMKNQ6E0U4 476 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PSRC1Q6PGN9 363 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 RSPO2Q6UXX9 243 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 Q6ZRG5 221 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GALNTL5Q7Z4T8 443 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 KRT77Q7Z794 578 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CDK20Q8IZL9 346 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MOAP1Q96BY2 351 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MVB12AQ96EY5 273 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PIK3IP1Q96FE7 263 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC41A3Q96GZ6 507 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZBED3Q96IU2 234 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC35G5Q96KT7 338 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ELOVL1Q9BW60 279 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CHST5Q9GZS9 411 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PTGES2Q9H7Z7 377 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SIRT3Q9NTG7 399 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MRPS18AQ9NVS2 196 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LHX3Q9UBR4 397 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ST6GALNAC2Q9UJ37 374 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CDV3Q9UKY7 258 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SCN8AQ9UQD0 1980 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PRAMEF26H0Y7S4 382 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 H3BNC9 293 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GSTZ1O43708 216 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF354AO60765 605 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OR2C1O95371 312 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SNAI1O95863 264 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ATP1B2P14415 290 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TYRP14679 529 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 HIST1H1BP16401 226 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 AFF3P51826 1226 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 IL10RAQ13651 578 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ENPP2Q13822 863 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MPPED2Q15777 294 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CDNFQ49AH0 187 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NSUN5P2Q63ZY6 315 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 RPL13AP3Q6NVV1 102 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 POMZP3Q6PJE2 187 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 VHLLQ6RSH7 139 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF813Q6ZN06 617 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM83HQ6ZRV2 1179 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 RNF44Q7L0R7 432 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 C5orf24Q7Z6I8 188 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 C17orf64Q86WR6 236 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 THNSL2Q86YJ6 484 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SKA3Q8IX90 412 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OR7G2Q8NG99 324 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OR4K17Q8NGC6 315 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PPTC7Q8NI37 304 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF563Q8TA94 476 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OR8D1Q8WZ84 308 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TMEM159Q96B96 161 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SNX22Q96L94 193 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PRRC1Q96M27 445 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC22A12Q96S37 553 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NMNAT3Q96T66 252 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 STACQ99469 402 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TCEAL7Q9BRU2 100 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MAGEH1Q9H213 219 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GLIPR2Q9H4G4 154 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 DMRT3Q9NQL9 472 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 POLE3Q9NRF9 147 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PPP4R1LQ9P1A2 415 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CGGBP1Q9UFW8 167 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GDF2Q9UK05 429 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 HS3ST3B1Q9Y662 390 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 A0A087WZY1 265 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 TSTD3H0UI37 97 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 CYB5BO43169 146 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF205O95201 554 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 CD74P04233 296 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 IL5P05113 134 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ERCC1P07992 297 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PGA3P0DJD8 388 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 NID1P14543 1247 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PPP2R1BP30154 601 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 CD200P41217 278 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 RAB5CP51148 216 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PDX1P52945 283 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 LBX1P52954 281 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PSMD4P55036 377 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 BTG2P78543 158 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 DHCR24Q15392 516 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 RNF151Q2KHN1 245 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 MOGAT2Q3SYC2 334 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 NKAIN2Q5VXU1 208 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 FCRL6Q6DN72 434 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 OR2T2Q6IF00 324 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ENPP7Q6UWV6 458 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 RTN4RL1Q86UN2 441 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF664Q8N3J9 261 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms